RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 FAM95CA0A1B0GW59 222 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 FAM155AB1AL88 458 aaPredicted RBP16.63■□□□□ 0.25
HOXD3-201ENST00000249440 MATN3O15232 486 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 FGF10O15520 208 aaPredicted RBP16.63■□□□□ 0.25
HOXD3-201ENST00000249440 PEX1O43933 1283 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 PAMP19021 973 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 CCR10P46092 362 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 SCNN1GP51170 649 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 GEMP55040 296 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 FKBP1BP68106 108 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 PURAQ00577 322 aaKnown RBP16.63■□□□□ 0.25
HOXD3-201ENST00000249440 BRMS1LQ5PSV4 323 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 BEND5Q7L4P6 421 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 SDCCAG8Q86SQ7 713 aaPredicted RBP16.63■□□□□ 0.25
HOXD3-201ENST00000249440 METTL23Q86XA0 190 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 DSELQ8IZU8 1212 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 HAPLN3Q96S86 360 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 ENTPD7Q9NQZ7 604 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 ACSS2Q9NR19 701 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 BCAP29Q9UHQ4 241 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 NEU3Q9UQ49 428 aa16.63■□□□□ 0.25
HOXD3-201ENST00000249440 COL4A4P53420 1690 aaPredicted RBP16.63■□□□□ 0.25
HOXD3-201ENST00000249440 H3BNX3 289 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 DLX3O60479 287 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 MAFKO60675 156 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 RNASEH1O60930 286 aaKnown RBP16.62■□□□□ 0.25
HOXD3-201ENST00000249440 SNUPNO95149 360 aaKnown RBP16.62■□□□□ 0.25
HOXD3-201ENST00000249440 IGLV3-25P01717 112 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 HTR7P34969 479 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 ARCN1P48444 511 aaKnown RBP16.62■□□□□ 0.25
HOXD3-201ENST00000249440 PGGT1BP53609 377 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 MPP1Q00013 466 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 FSCN1Q16658 493 aaKnown RBP16.62■□□□□ 0.25
HOXD3-201ENST00000249440 DENND5AQ6IQ26 1287 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 ESRP1Q6NXG1 681 aaKnown RBP16.62■□□□□ 0.25
HOXD3-201ENST00000249440 ARHGAP12Q8IWW6 846 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 SPDYE1Q8NFV5 336 aaPredicted RBP16.62■□□□□ 0.25
HOXD3-201ENST00000249440 RTP3Q9BQQ7 232 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 PAAF1Q9BRP4 392 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 FICDQ9BVA6 458 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 FTHL17Q9BXU8 183 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 MRM3Q9HC36 420 aaKnown RBP16.62■□□□□ 0.25
HOXD3-201ENST00000249440 NCKIPSDQ9NZQ3 722 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 CPA4Q9UI42 421 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 VPS28Q9UK41 221 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 TCAF1Q9Y4C2 921 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 TRPV2Q9Y5S1 764 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 PAPOLAP51003 745 aaKnown RBP16.62■□□□□ 0.25
HOXD3-201ENST00000249440 KPNA2P52292 529 aaKnown RBP16.62■□□□□ 0.25
HOXD3-201ENST00000249440 AQP4P55087 323 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 RPL26P61254 145 aaKnown RBP16.62■□□□□ 0.25
HOXD3-201ENST00000249440 EIF4EBP2Q13542 120 aaPredicted RBP16.62■□□□□ 0.25
HOXD3-201ENST00000249440 PPM1LQ5SGD2 360 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 FOXB2Q5VYV0 432 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 NXNQ6DKJ4 435 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 BNC2Q6ZN30 1099 aaPredicted RBP16.62■□□□□ 0.25
HOXD3-201ENST00000249440 CEP97Q8IW35 865 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 LSMEM2Q8N112 164 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 NXNL1Q96CM4 212 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 FSD1LQ9BXM9 530 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 MRPL46Q9H2W6 279 aaKnown RBP16.62■□□□□ 0.25
HOXD3-201ENST00000249440 C6orf203Q9P0P8 240 aaPredicted RBP16.62■□□□□ 0.25
HOXD3-201ENST00000249440 G3BP2Q9UN86 482 aaKnown RBP16.62■□□□□ 0.25
HOXD3-201ENST00000249440 PSMD13Q9UNM6 376 aa16.62■□□□□ 0.25
HOXD3-201ENST00000249440 IRAK2O43187 625 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 PGK1P00558 417 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 VCLP18206 1134 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 HERC3Q15034 1050 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 THEMIS2Q5TEJ8 643 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 TIGD7Q6NT04 549 aaPredicted RBP16.61■□□□□ 0.25
HOXD3-201ENST00000249440 RGMBQ6NW40 437 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 AGMOQ6ZNB7 445 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 ICA1LQ8NDH6 482 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 GPR78Q96P69 363 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 CDRT15Q96T59 188 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 ZNF385DQ9H6B1 395 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 ABCC13Q9NSE7 274 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 A0A087X1B8 175 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 NPHS1O60500 1241 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 PAGE1O75459 146 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 TADA2AO75478 443 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 B3GAT3O94766 335 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 ARNTP27540 789 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 HOXC13P31276 330 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 CCR1P32246 355 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 ADRA1AP35348 466 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 SLC12A2P55011 1212 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 NSUN2Q08J23 767 aaKnown RBP eCLIP16.61■□□□□ 0.25
HOXD3-201ENST00000249440 MSLNQ13421 630 aaPredicted RBP16.61■□□□□ 0.25
HOXD3-201ENST00000249440 ZNF460Q14592 562 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 CNGA3Q16281 694 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 CCL14Q16627 93 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 MMEL1Q495T6 779 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 ST13P4Q8IZP2 240 aaPredicted RBP16.61■□□□□ 0.25
HOXD3-201ENST00000249440 PGAM4Q8N0Y7 254 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 CCNYL1Q8N7R7 359 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 CATSPER2Q96P56 530 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 BTBD9Q96Q07 612 aa16.61■□□□□ 0.25
HOXD3-201ENST00000249440 MRPL57Q9BQC6 102 aaKnown RBP16.61■□□□□ 0.25
HOXD3-201ENST00000249440 SLC39A8Q9C0K1 460 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms