RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 HIC2Q96JB3 615 aa20.42■□□□□ 0.86
SYNGAP1-227ENST00000638142 MED10Q9BTT4 135 aa20.42■□□□□ 0.86
SYNGAP1-227ENST00000638142 ULBP1Q9BZM6 244 aa20.42■□□□□ 0.86
SYNGAP1-227ENST00000638142 OCEL1Q9H607 264 aa20.42■□□□□ 0.86
SYNGAP1-227ENST00000638142 PTTG2Q9NZH5 202 aa20.42■□□□□ 0.86
SYNGAP1-227ENST00000638142 GOLGA8TH3BQL2 631 aa20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 FAM200BP0CF97 657 aa20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 DAOAP59103 153 aa20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 DGKDQ16760 1214 aa20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 NXNQ6DKJ4 435 aa20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 LRRC8EQ6NSJ5 796 aa20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 CENPLQ8N0S6 344 aaPredicted RBP20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 LSMEM2Q8N112 164 aa20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 AHI1Q8N157 1196 aa20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 BHLHE22Q8NFJ8 381 aaPredicted RBP20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 UBAP1Q9NZ09 502 aa20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 AP4B1Q9Y6B7 739 aa20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 PRSS51A0A1B0GVH4 220 aa20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 CFLARO15519 480 aa20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 PGM3O95394 542 aa20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 CLPTM1O96005 669 aa20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 CAPNS1P04632 268 aa20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 SAT1P21673 171 aa20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 GLRBP48167 497 aa20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 PKNOX1P55347 436 aa20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 MAP3K7CLP57077 242 aa20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 ARMC3Q5W041 872 aa20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 TMEM198Q66K66 360 aa20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 ZFRQ96KR1 1074 aaKnown RBP20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 ACSS2Q9NR19 701 aa20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 PIN4Q9Y237 131 aaKnown RBP20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 ACOT9Q9Y305 439 aa20.41■□□□□ 0.86
SYNGAP1-227ENST00000638142 YJEFN3A6XGL0 299 aa20.4■□□□□ 0.86
SYNGAP1-227ENST00000638142 TNFAIP8O95379 198 aa20.4■□□□□ 0.86
SYNGAP1-227ENST00000638142 FAM163BP0C2L3 166 aa20.4■□□□□ 0.86
SYNGAP1-227ENST00000638142 SPATA31D3P0C874 917 aa20.4■□□□□ 0.86
SYNGAP1-227ENST00000638142 MS4A2Q01362 244 aa20.4■□□□□ 0.86
SYNGAP1-227ENST00000638142 TBC1D25Q3MII6 688 aa20.4■□□□□ 0.86
SYNGAP1-227ENST00000638142 SPATA31D4Q6ZUB0 917 aa20.4■□□□□ 0.86
SYNGAP1-227ENST00000638142 CNTN4Q8IWV2 1026 aa20.4■□□□□ 0.86
SYNGAP1-227ENST00000638142 KLHDC8BQ8IXV7 354 aa20.4■□□□□ 0.86
SYNGAP1-227ENST00000638142 COPS7BQ9H9Q2 264 aaPredicted RBP20.4■□□□□ 0.86
SYNGAP1-227ENST00000638142 RRN3Q9NYV6 651 aa20.4■□□□□ 0.86
SYNGAP1-227ENST00000638142 DLX3O60479 287 aa20.39■□□□□ 0.86
SYNGAP1-227ENST00000638142 OR6B1O95007 311 aa20.39■□□□□ 0.86
SYNGAP1-227ENST00000638142 ASLP04424 464 aa20.39■□□□□ 0.86
SYNGAP1-227ENST00000638142 DPF3Q92784 378 aa20.39■□□□□ 0.86
SYNGAP1-227ENST00000638142 MRPS26Q9BYN8 205 aaKnown RBP20.39■□□□□ 0.86
SYNGAP1-227ENST00000638142 ZNF696Q9H7X3 374 aa20.39■□□□□ 0.86
SYNGAP1-227ENST00000638142 CNGB3Q9NQW8 809 aa20.39■□□□□ 0.86
SYNGAP1-227ENST00000638142 DDIT4Q9NX09 232 aa20.39■□□□□ 0.86
SYNGAP1-227ENST00000638142 CLIC5Q9NZA1 410 aa20.39■□□□□ 0.86
SYNGAP1-227ENST00000638142 XPR1Q9UBH6 696 aa20.39■□□□□ 0.86
SYNGAP1-227ENST00000638142 COPG1Q9Y678 874 aaKnown RBP20.39■□□□□ 0.86
SYNGAP1-227ENST00000638142 ZNF236Q9UL36 1845 aa20.39■□□□□ 0.85
SYNGAP1-227ENST00000638142 TRPC5OSA6NMA1 111 aa20.39■□□□□ 0.85
SYNGAP1-227ENST00000638142 NPHS1O60500 1241 aa20.39■□□□□ 0.85
SYNGAP1-227ENST00000638142 JCHAINP01591 159 aa20.39■□□□□ 0.85
SYNGAP1-227ENST00000638142 AHSGP02765 367 aa20.39■□□□□ 0.85
SYNGAP1-227ENST00000638142 TFAP2AP05549 437 aa20.39■□□□□ 0.85
SYNGAP1-227ENST00000638142 DPP6P42658 865 aa20.39■□□□□ 0.85
SYNGAP1-227ENST00000638142 DUSP28Q4G0W2 176 aa20.39■□□□□ 0.85
SYNGAP1-227ENST00000638142 ZNF467Q7Z7K2 595 aaPredicted RBP20.39■□□□□ 0.85
SYNGAP1-227ENST00000638142 LILRA2Q8N149 483 aa20.39■□□□□ 0.85
SYNGAP1-227ENST00000638142 ZSCAN18Q8TBC5 510 aaPredicted RBP20.39■□□□□ 0.85
SYNGAP1-227ENST00000638142 USP13Q92995 863 aaPredicted RBP20.39■□□□□ 0.85
SYNGAP1-227ENST00000638142 MAELQ96JY0 434 aaKnown RBP20.39■□□□□ 0.85
SYNGAP1-227ENST00000638142 RNF39Q9H2S5 420 aa20.39■□□□□ 0.85
SYNGAP1-227ENST00000638142 UBP1Q9NZI7 540 aa20.39■□□□□ 0.85
SYNGAP1-227ENST00000638142 LZTS1Q9Y250 596 aa20.39■□□□□ 0.85
SYNGAP1-227ENST00000638142 SMIM35A0A1B0GVV1 85 aa20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 ACOT8O14734 319 aa20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 GABRDO14764 452 aa20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 F9P00740 461 aa20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 JUNP05412 331 aaKnown RBP20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 SRGAP2BP0DMP2 458 aa20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 HSPA1AP0DMV8 641 aaKnown RBP20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 HSPA1BP0DMV9 641 aaKnown RBP20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 NCAM1P13591 858 aa20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 GABRB3P28472 473 aa20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 AVPR1AP37288 418 aa20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 RAB10P61026 200 aa20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 ZNF33AQ06730 810 aa20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 PCID2Q5JVF3 399 aa20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 MOB2Q70IA6 237 aa20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 SLC41A1Q8IVJ1 513 aa20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 KDM1BQ8NB78 822 aa20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 OR6J1Q8NGC5 347 aa20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 NMD3Q96D46 503 aaKnown RBP20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 COLEC11Q9BWP8 271 aa20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 ADARB2Q9NS39 739 aaKnown RBP20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 MRGBPQ9NV56 204 aa20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 CACNG3O60359 315 aa20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 SNAI1O95863 264 aaPredicted RBP20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 YBX3P16989 372 aaKnown RBP eCLIP20.38■□□□□ 0.851e-7■■■■□ 23.4
SYNGAP1-227ENST00000638142 SMPD1P17405 629 aa20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 LARP7Q4G0J3 582 aaKnown RBP eCLIP20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 WSCD1Q658N2 575 aa20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 PKN3Q6P5Z2 889 aa20.38■□□□□ 0.85
SYNGAP1-227ENST00000638142 GPRC5AQ8NFJ5 357 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms