RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	VPS51	Q9UID3	782 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	CD207	Q9UJ71	328 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	FBXO10	Q9UK96	956 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	CLEC4E	Q9ULY5	219 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	TTLL3	Q9Y4R7	772 aa		11.96	□□□□□ -0.49
CLN6-223	ENST00000637823	BRWD1	Q9NSI6	2320 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	SDR42E2	A6NKP2	422 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	SOX1	O00570	391 aa	Predicted RBP	11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	HOXC11	O43248	304 aa	Predicted RBP	11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	SNAP91	O60641	907 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	AVIL	O75366	819 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	CD160	O95971	181 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	CYP17A1	P05093	508 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	ADH5	P11766	374 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	NPY2R	P49146	381 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	EIF3B	P55884	814 aa	Known RBP	11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	SULT2A1	Q06520	285 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	NSUN2	Q08J23	767 aa	Known RBP eCLIP	11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	NIPAL4	Q0D2K0	466 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	FCHO2	Q0JRZ9	810 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	NR1H3	Q13133	447 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	SLC29A2	Q14542	456 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	SLC14A2	Q15849	920 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	CCDC38	Q502W7	563 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	PITRM1	Q5JRX3	1037 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	ASTL	Q6HA08	431 aa	Predicted RBP	11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	ZNF534	Q76KX8	674 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	PRPF39	Q86UA1	669 aa	Known RBP	11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	PALM2	Q8IXS6	379 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	YAF2	Q8IY57	180 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	ZBED8	Q8IZ13	594 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	SMRP1	Q8NCR6	262 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	SPATA22	Q8NHS9	363 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	ARRDC2	Q8TBH0	407 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	TADA1	Q96BN2	335 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	SIGLEC10	Q96LC7	697 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	ZIM3	Q96PE6	472 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	TBL1Y	Q9BQ87	522 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	FAM83C	Q9BQN1	747 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	MGME1	Q9BQP7	344 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	CINP	Q9BW66	212 aa	Predicted RBP	11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	EPB41L4B	Q9H329	900 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	POMK	Q9H5K3	350 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	CASS4	Q9NQ75	786 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	UBP1	Q9NZI7	540 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	GGA2	Q9UJY4	613 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	INTS6	Q9UL03	887 aa	Known RBP	11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	PLAA	Q9Y263	795 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	TEX264	Q9Y6I9	313 aa		11.95	□□□□□ -0.5
CLN6-223	ENST00000637823	ECI2	O75521	394 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	BANF1	O75531	89 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	MT-CYB	P00156	380 aa	Predicted RBP	11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	MMP2	P08253	660 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	ABHD2	P08910	425 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	GSTA2	P09210	222 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	NUDT17	P0C025	328 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	PABPC1	P11940	636 aa	Known RBP	11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	PSMC3	P17980	439 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	HLA-F	P30511	346 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	ADRA1A	P35348	466 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	ELK3	P41970	407 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	CD86	P42081	329 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	GRIA1	P42261	906 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	MAX	P61244	160 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	SKOR1	P84550	965 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	DSC2	Q02487	901 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	GPS2	Q13227	327 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	SPARCL1	Q14515	664 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	FASTKD3	Q14CZ7	662 aa	Known RBP	11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	RALGPS1	Q5JS13	557 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	TRIM68	Q6AZZ1	485 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	KDELC1	Q6UW63	502 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	VIT	Q6UXI7	678 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	LINGO4	Q6UY18	593 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	MTSS1L	Q765P7	747 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	ANKMY2	Q8IV38	441 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	MICALL1	Q8N3F8	863 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	FBXO36	Q8NEA4	188 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	SUSD6	Q92537	303 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	ASIC4	Q96FT7	647 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	PKNOX2	Q96KN3	472 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	C9orf72	Q96LT7	481 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	RUFY1	Q96T51	708 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	SEMA3C	Q99985	751 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	BFAR	Q9NZS9	450 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	EPS15L1	Q9UBC2	864 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	ACTL7A	Q9Y615	435 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	NFS1	Q9Y697	457 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823	KIAA1549L	Q6ZVL6	1849 aa		11.94	□□□□□ -0.5
CLN6-223	ENST00000637823		A0A087WUV0	522 aa	Predicted RBP	11.93	□□□□□ -0.5
CLN6-223	ENST00000637823	MAGEB16	A2A368	324 aa		11.93	□□□□□ -0.5
CLN6-223	ENST00000637823	MUSK	O15146	869 aa		11.93	□□□□□ -0.5
CLN6-223	ENST00000637823	INSIG1	O15503	277 aa		11.93	□□□□□ -0.5
CLN6-223	ENST00000637823	OPA1	O60313	960 aa		11.93	□□□□□ -0.5
CLN6-223	ENST00000637823	PMPCB	O75439	489 aa		11.93	□□□□□ -0.5
CLN6-223	ENST00000637823	TMCC1	O94876	653 aa		11.93	□□□□□ -0.5
CLN6-223	ENST00000637823	ACSL3	O95573	720 aa		11.93	□□□□□ -0.5

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