RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 DUS2Q9NX74 493 aaKnown RBP20.43■□□□□ 0.86
CLN3-250ENST00000636839 ZMYM5Q9UJ78 669 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 MAD1L1Q9Y6D9 718 aa20.43■□□□□ 0.86
CLN3-250ENST00000636839 OTOL1A6NHN0 477 aaPredicted RBP20.42■□□□□ 0.86
CLN3-250ENST00000636839 EIF3HO15372 352 aaKnown RBP eCLIP20.42■□□□□ 0.86
CLN3-250ENST00000636839 ARSAP15289 507 aa20.42■□□□□ 0.86
CLN3-250ENST00000636839 TCF3P15923 654 aa20.42■□□□□ 0.86
CLN3-250ENST00000636839 FCARP24071 287 aa20.42■□□□□ 0.86
CLN3-250ENST00000636839 CTSOP43234 321 aaPredicted RBP20.42■□□□□ 0.86
CLN3-250ENST00000636839 IFNAR2P48551 515 aa20.42■□□□□ 0.86
CLN3-250ENST00000636839 IFFO1Q0D2I5 559 aa20.42■□□□□ 0.86
CLN3-250ENST00000636839 ZNF235Q14590 738 aa20.42■□□□□ 0.86
CLN3-250ENST00000636839 LONRF1Q17RB8 773 aa20.42■□□□□ 0.86
CLN3-250ENST00000636839 CTC1Q2NKJ3 1217 aa20.42■□□□□ 0.86
CLN3-250ENST00000636839 CCDC38Q502W7 563 aa20.42■□□□□ 0.86
CLN3-250ENST00000636839 CERCAMQ5T4B2 595 aa20.42■□□□□ 0.86
CLN3-250ENST00000636839 LRIG3Q6UXM1 1119 aa20.42■□□□□ 0.86
CLN3-250ENST00000636839 ZNF783Q6ZMS7 281 aa20.42■□□□□ 0.86
CLN3-250ENST00000636839 C3orf62Q6ZUJ4 267 aa20.42■□□□□ 0.86
CLN3-250ENST00000636839 KLHDC8BQ8IXV7 354 aa20.42■□□□□ 0.86
CLN3-250ENST00000636839 RUFY1Q96T51 708 aa20.42■□□□□ 0.86
CLN3-250ENST00000636839 SH3GL2Q99962 352 aa20.42■□□□□ 0.86
CLN3-250ENST00000636839 FICDQ9BVA6 458 aa20.42■□□□□ 0.86
CLN3-250ENST00000636839 XAB2Q9HCS7 855 aaKnown RBP20.42■□□□□ 0.86
CLN3-250ENST00000636839 SYBUQ9NX95 663 aa20.42■□□□□ 0.86
CLN3-250ENST00000636839 TBC1D14Q9P2M4 693 aa20.42■□□□□ 0.86
CLN3-250ENST00000636839 TLDC2A0PJX2 215 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 HEPACAM2A8MVW5 462 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 WEE1P30291 646 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 CHRNA4P43681 627 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 TNK2Q07912 1038 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 SKIDA1Q1XH10 827 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 ATAT1Q5SQI0 421 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 KDELC1Q6UW63 502 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 PALM2Q8IXS6 379 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 ZNF599Q96NL3 588 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 CENPHQ9H3R5 247 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 CASS4Q9NQ75 786 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 FCF1Q9Y324 198 aaKnown RBP20.41■□□□□ 0.86
CLN3-250ENST00000636839 SMAD6O43541 496 aaKnown RBP20.41■□□□□ 0.86
CLN3-250ENST00000636839 ADRA1AP35348 466 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 WNT3AP56704 352 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 SARNPP82979 210 aaKnown RBP20.41■□□□□ 0.86
CLN3-250ENST00000636839 EFTUD2Q15029 972 aaKnown RBP eCLIP20.41■□□□□ 0.863e-6■■■■□ 22
CLN3-250ENST00000636839 DHCR24Q15392 516 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 TTMPQ5BVD1 217 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 DENND5AQ6IQ26 1287 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 CES3Q6UWW8 571 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 DNAAF3Q8N9W5 541 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 PLA2G2FQ9BZM2 168 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 PHACTR1Q9C0D0 580 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 ACBD3Q9H3P7 528 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 EBF3Q9H4W6 596 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 LRRC40Q9H9A6 602 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 GDE1Q9NZC3 331 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 KIAA1522Q9P206 1035 aaPredicted RBP20.41■□□□□ 0.86
CLN3-250ENST00000636839 ZC3H7BQ9UGR2 993 aaKnown RBP20.41■□□□□ 0.86
CLN3-250ENST00000636839 CDH7Q9ULB5 785 aa20.41■□□□□ 0.86
CLN3-250ENST00000636839 AAR2Q9Y312 384 aaKnown RBP20.41■□□□□ 0.86
CLN3-250ENST00000636839 ANXA9O76027 345 aa20.4■□□□□ 0.86
CLN3-250ENST00000636839 TMCC1O94876 653 aa20.4■□□□□ 0.86
CLN3-250ENST00000636839 HOXB8P17481 243 aaPredicted RBP20.4■□□□□ 0.86
CLN3-250ENST00000636839 SP100P23497 879 aaPredicted RBP20.4■□□□□ 0.86
CLN3-250ENST00000636839 SMAD1Q15797 465 aaKnown RBP20.4■□□□□ 0.86
CLN3-250ENST00000636839 EML3Q32P44 896 aa20.4■□□□□ 0.86
CLN3-250ENST00000636839 PLEKHG6Q3KR16 790 aa20.4■□□□□ 0.86
CLN3-250ENST00000636839 KCTD16Q68DU8 428 aa20.4■□□□□ 0.86
CLN3-250ENST00000636839 CEP128Q6ZU80 1094 aa20.4■□□□□ 0.86
CLN3-250ENST00000636839 BPIFB1Q8TDL5 484 aa20.4■□□□□ 0.86
CLN3-250ENST00000636839 OSCP1Q8WVF1 389 aa20.4■□□□□ 0.86
CLN3-250ENST00000636839 MRRFQ96E11 262 aaKnown RBP20.4■□□□□ 0.86
CLN3-250ENST00000636839 LRCH3Q96II8 777 aa20.4■□□□□ 0.86
CLN3-250ENST00000636839 RPL10LQ96L21 214 aaKnown RBP20.4■□□□□ 0.86
CLN3-250ENST00000636839 TBL1YQ9BQ87 522 aa20.4■□□□□ 0.86
CLN3-250ENST00000636839 CINPQ9BW66 212 aaPredicted RBP20.4■□□□□ 0.86
CLN3-250ENST00000636839 FRMD8Q9BZ67 464 aaPredicted RBP20.4■□□□□ 0.86
CLN3-250ENST00000636839 NOD2Q9HC29 1040 aa20.4■□□□□ 0.86
CLN3-250ENST00000636839 BRWD1Q9NSI6 2320 aa20.4■□□□□ 0.86
CLN3-250ENST00000636839 SDR42E2A6NKP2 422 aa20.39■□□□□ 0.86
CLN3-250ENST00000636839 FOXO6A8MYZ6 492 aa20.39■□□□□ 0.86
CLN3-250ENST00000636839 CPP00450 1065 aa20.39■□□□□ 0.86
CLN3-250ENST00000636839 CYP17A1P05093 508 aa20.39■□□□□ 0.86
CLN3-250ENST00000636839 MLNP12872 115 aa20.39■□□□□ 0.86
CLN3-250ENST00000636839 SKOR1P84550 965 aa20.39■□□□□ 0.86
CLN3-250ENST00000636839 KRT71Q3SY84 523 aa20.39■□□□□ 0.86
CLN3-250ENST00000636839 FUT11Q495W5 492 aa20.39■□□□□ 0.86
CLN3-250ENST00000636839 DNAJC21Q5F1R6 531 aaKnown RBP20.39■□□□□ 0.86
CLN3-250ENST00000636839 CASC4Q6P4E1 433 aa20.39■□□□□ 0.86
CLN3-250ENST00000636839 MTERF4Q7Z6M4 381 aaKnown RBP20.39■□□□□ 0.86
CLN3-250ENST00000636839 UNC5BQ8IZJ1 945 aa20.39■□□□□ 0.86
CLN3-250ENST00000636839 SLC25A41Q8N5S1 370 aa20.39■□□□□ 0.86
CLN3-250ENST00000636839 PSKH2Q96QS6 385 aa20.39■□□□□ 0.86
CLN3-250ENST00000636839 EBNA1BP2Q99848 306 aaKnown RBP20.39■□□□□ 0.86
CLN3-250ENST00000636839 POLR1EQ9GZS1 481 aaKnown RBP20.39■□□□□ 0.86
CLN3-250ENST00000636839 CTNNAL1Q9UBT7 734 aa20.39■□□□□ 0.86
CLN3-250ENST00000636839 SEPT3Q9UH03 358 aa20.39■□□□□ 0.86
CLN3-250ENST00000636839 ERI2A8K979 691 aaKnown RBP20.39■□□□□ 0.85
CLN3-250ENST00000636839 OAS2P29728 719 aaKnown RBP20.39■□□□□ 0.85
CLN3-250ENST00000636839 STK19P49842 368 aaPredicted RBP20.39■□□□□ 0.85
CLN3-250ENST00000636839 SCNN1BP51168 640 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms