RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 CSKP41240 450 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 NR2C2P49116 596 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 MRPL58Q14197 206 aaKnown RBP10.69□□□□□ -0.7
VPS11-208ENST00000621676 STAT4Q14765 748 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 GET4Q7L5D6 327 aaPredicted RBP10.69□□□□□ -0.7
VPS11-208ENST00000621676 PGBD5Q8N414 524 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 RTL3Q8N8U3 475 aaKnown RBP10.69□□□□□ -0.7
VPS11-208ENST00000621676 TDRD5Q8NAT2 981 aaKnown RBP10.69□□□□□ -0.7
VPS11-208ENST00000621676 MAML1Q92585 1016 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 HDAC10Q969S8 669 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 FUBP3Q96I24 572 aaKnown RBP eCLIP10.69□□□□□ -0.7
VPS11-208ENST00000621676 C8orf48Q96LL4 319 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 PRICKLE1Q96MT3 831 aaPredicted RBP10.69□□□□□ -0.7
VPS11-208ENST00000621676 TOX2Q96NM4 488 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 CRISPLD2Q9H0B8 497 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 IL23AQ9NPF7 189 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 MTO1Q9Y2Z2 717 aaKnown RBP10.69□□□□□ -0.7
VPS11-208ENST00000621676 INSL6Q9Y581 213 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 H0YHG0 523 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 RTN3O95197 1032 aaPredicted RBP10.69□□□□□ -0.7
VPS11-208ENST00000621676 CXCL10P02778 98 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 RPLP2P05387 115 aaKnown RBP10.69□□□□□ -0.7
VPS11-208ENST00000621676 NUDT17P0C025 328 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 CPA2P48052 419 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 ARSDP51689 593 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 PRAMEP78395 509 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 PRPSAP1Q14558 356 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 SLC8B1Q6J4K2 584 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 BZW1Q7L1Q6 419 aaKnown RBP10.69□□□□□ -0.7
VPS11-208ENST00000621676 ARFGAP2Q8N6H7 521 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 FAXDC2Q96IV6 333 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 OLFM3Q96PB7 478 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 PITPNM3Q9BZ71 974 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 TRIM33Q9UPN9 1127 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 SQORQ9Y6N5 450 aa10.69□□□□□ -0.7
VPS11-208ENST00000621676 FAM47DPA6NHR8 397 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 MTX2O75431 263 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 SOX11P35716 441 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 OXCT1P55809 520 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 CAV1Q03135 178 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 PARP6Q2NL67 630 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 SLC41A1Q8IVJ1 513 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 PLD6Q8N2A8 252 aaKnown RBP10.68□□□□□ -0.7
VPS11-208ENST00000621676 CCNYL1Q8N7R7 359 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 CFHR5Q9BXR6 569 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 EBF3Q9H4W6 596 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 ELAC1Q9H777 363 aaKnown RBP10.68□□□□□ -0.7
VPS11-208ENST00000621676 GLOD4Q9HC38 313 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 COMMD10Q9Y6G5 202 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 ARSAP15289 507 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 LAG3P18627 525 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 USP10Q14694 798 aaKnown RBP10.68□□□□□ -0.7
VPS11-208ENST00000621676 TAZQ16635 292 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 LRIG3Q6UXM1 1119 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 TAS2R42Q7RTR8 314 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 TMEM150AQ86TG1 271 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 TRABD2AQ86V40 505 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 ARID3BQ8IVW6 561 aaPredicted RBP10.68□□□□□ -0.7
VPS11-208ENST00000621676 SKA2Q8WVK7 121 aaPredicted RBP10.68□□□□□ -0.7
VPS11-208ENST00000621676 NSMCE3Q96MG7 304 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 GORASP1Q9BQQ3 440 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 CINPQ9BW66 212 aaPredicted RBP10.68□□□□□ -0.7
VPS11-208ENST00000621676 BBS2Q9BXC9 721 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 POLR3BQ9NW08 1133 aaPredicted RBP10.68□□□□□ -0.7
VPS11-208ENST00000621676 MRPS23Q9Y3D9 190 aaKnown RBP10.68□□□□□ -0.7
VPS11-208ENST00000621676 KRT87PA6NCN2 255 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 C5orf60A6NFR6 353 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 OPHN1O60890 802 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 GCATO75600 419 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 HAUS5O94927 633 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 POLBP06746 335 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 HLA-EP13747 358 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 CD70P32970 193 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 NKX3-2P78367 333 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 COG7P83436 770 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 GNA12Q03113 381 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 PPIDQ08752 370 aaKnown RBP10.68□□□□□ -0.7
VPS11-208ENST00000621676 SEMA3BQ13214 749 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 THOC5Q13769 683 aaKnown RBP10.68□□□□□ -0.7
VPS11-208ENST00000621676 TCEAL5Q5H9L2 206 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 DRICH1Q6PGQ1 229 aaPredicted RBP10.68□□□□□ -0.7
VPS11-208ENST00000621676 PIM3Q86V86 326 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 SLCO2A1Q92959 643 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 PHF21BQ96EK2 531 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 PBX4Q9BYU1 374 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 ASAH2Q9NR71 780 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 STK38LQ9Y2H1 464 aa10.68□□□□□ -0.7
VPS11-208ENST00000621676 LINC01553A4QN01 128 aa10.67□□□□□ -0.7
VPS11-208ENST00000621676 NEMP1O14524 444 aa10.67□□□□□ -0.7
VPS11-208ENST00000621676 RHOP08100 348 aa10.67□□□□□ -0.7
VPS11-208ENST00000621676 RHOAP61586 193 aa10.67□□□□□ -0.7
VPS11-208ENST00000621676 DSG1Q02413 1049 aa10.67□□□□□ -0.7
VPS11-208ENST00000621676 GRM2Q14416 872 aa10.67□□□□□ -0.7
VPS11-208ENST00000621676 TRIP4Q15650 581 aaPredicted RBP10.67□□□□□ -0.7
VPS11-208ENST00000621676 RARS2Q5T160 578 aaKnown RBP10.67□□□□□ -0.7
VPS11-208ENST00000621676 CNSTQ6PJW8 725 aa10.67□□□□□ -0.7
VPS11-208ENST00000621676 RFLNAQ6ZTI6 216 aa10.67□□□□□ -0.7
VPS11-208ENST00000621676 DDX53Q86TM3 631 aaKnown RBP10.67□□□□□ -0.7
VPS11-208ENST00000621676 KCNMB4Q86W47 210 aa10.67□□□□□ -0.7
VPS11-208ENST00000621676 CRIPAKQ8N1N5 446 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms