RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 MAGEE2Q8TD90 523 aaPredicted RBP12.76□□□□□ -0.37
LIG1-221ENST00000613670 NCLNQ969V3 563 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 FCRL3Q96P31 734 aaPredicted RBP12.76□□□□□ -0.37
LIG1-221ENST00000613670 NXF3Q9H4D5 531 aaKnown RBP12.76□□□□□ -0.37
LIG1-221ENST00000613670 OCEL1Q9H607 264 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 SPAG4Q9NPE6 437 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 ARFGEF1Q9Y6D6 1849 aa12.76□□□□□ -0.37
LIG1-221ENST00000613670 C1orf232A0A0U1RR37 186 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 ASB14A6NK59 587 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 ERI2A8K979 691 aaKnown RBP12.75□□□□□ -0.37
LIG1-221ENST00000613670 MT-CYBP00156 380 aaPredicted RBP12.75□□□□□ -0.37
LIG1-221ENST00000613670 HSPA1AP0DMV8 641 aaKnown RBP12.75□□□□□ -0.37
LIG1-221ENST00000613670 HSPA1BP0DMV9 641 aaKnown RBP12.75□□□□□ -0.37
LIG1-221ENST00000613670 CYP3A5P20815 502 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 ICAM3P32942 547 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 RAB10P61026 200 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 SV2CQ496J9 727 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 CES4AQ5XG92 561 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 BTBD8Q5XKL5 378 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 CLEC6AQ6EIG7 209 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 FBXL19Q6PCT2 694 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 TIFABQ6ZNK6 161 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 POLR1BQ9H9Y6 1135 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.75□□□□□ -0.37
LIG1-221ENST00000613670 ANXA9O76027 345 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 ALBP02768 609 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 NFKBIAP25963 317 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 TRAF2Q12933 501 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 LAMC2Q13753 1193 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 NFYCQ13952 458 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 TARBP2Q15633 366 aaKnown RBP12.75□□□□□ -0.37
LIG1-221ENST00000613670 SLC25A52Q3SY17 297 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 NEPROQ6NW34 567 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 ADGRG6Q86SQ4 1221 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 PATL1Q86TB9 770 aaKnown RBP12.75□□□□□ -0.37
LIG1-221ENST00000613670 OR6J1Q8NGC5 347 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 DNAJB14Q8TBM8 379 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 SORT1Q99523 831 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 SLC25A23Q9BV35 468 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 NACA2Q9H009 215 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 RHOJQ9H4E5 214 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 DDX43Q9NXZ2 648 aaKnown RBP12.75□□□□□ -0.37
LIG1-221ENST00000613670 AAR2Q9Y312 384 aaKnown RBP12.75□□□□□ -0.37
LIG1-221ENST00000613670 A0A087WXM4 84 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 HMX2A2RU54 273 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 SUPT3HB4E1H0 165 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 CCL22O00626 93 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 TADA2AO75478 443 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 PTPN3P26045 913 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 ARPP19P56211 112 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 OCA2Q04671 838 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 FBXO48Q5FWF7 155 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 SYPL2Q5VXT5 272 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 WSCD1Q658N2 575 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 CTU1Q7Z7A3 348 aaKnown RBP12.75□□□□□ -0.37
LIG1-221ENST00000613670 LDB1Q86U70 411 aaPredicted RBP12.75□□□□□ -0.37
LIG1-221ENST00000613670 GIPC3Q8TF64 312 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 ERLEC1Q96DZ1 483 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 IFT43Q96FT9 208 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 SP110Q9HB58 689 aa12.75□□□□□ -0.37
LIG1-221ENST00000613670 COPG1Q9Y678 874 aaKnown RBP12.75□□□□□ -0.37
LIG1-221ENST00000613670 NHSQ6T4R5 1651 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 E7ENX8 843 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 FOXD2O60548 495 aaPredicted RBP12.74□□□□□ -0.37
LIG1-221ENST00000613670 AP2A1O95782 977 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 IL1BP01584 269 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 ADRA1BP35368 520 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 PTPN9P43378 593 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 CSE1LP55060 971 aaKnown RBP12.74□□□□□ -0.37
LIG1-221ENST00000613670 MS4A2Q01362 244 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 CCDC142Q17RM4 750 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 HSF5Q4G112 596 aaPredicted RBP12.74□□□□□ -0.37
LIG1-221ENST00000613670 ESRP1Q6NXG1 681 aaKnown RBP12.74□□□□□ -0.37
LIG1-221ENST00000613670 OFCC1Q8IZS5 231 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 OSBPL11Q9BXB4 747 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 MID1IP1Q9NPA3 183 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 DNAAF2Q9NVR5 837 aaKnown RBP12.74□□□□□ -0.37
LIG1-221ENST00000613670 ATG7O95352 703 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 HMBSP08397 361 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 CAPRIN1Q14444 709 aaKnown RBP12.74□□□□□ -0.37
LIG1-221ENST00000613670 PLCL1Q15111 1095 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 DCAF4L1Q3SXM0 396 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 SCIMPQ6UWF3 145 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 PLPPR4Q7Z2D5 763 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 PIWIL4Q7Z3Z4 852 aaKnown RBP12.74□□□□□ -0.37
LIG1-221ENST00000613670 METTL23Q86XA0 190 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 NT5DC4Q86YG4 428 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 CBR4Q8N4T8 237 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 BLOC1S5Q8TDH9 187 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 TSPAN17Q96FV3 270 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 HSFY1Q96LI6 401 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 BEGAINQ9BUH8 593 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 FTHL17Q9BXU8 183 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 PDGFDQ9GZP0 370 aaPredicted RBP12.74□□□□□ -0.37
LIG1-221ENST00000613670 PNPLA3Q9NST1 481 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 GID8Q9NWU2 228 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 FBXO5Q9UKT4 447 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 SNX5Q9Y5X3 404 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 SYCE1LA8MT33 242 aa12.74□□□□□ -0.37
LIG1-221ENST00000613670 PDLIM1O00151 329 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms