RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 ITGB6P18564 788 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 L1CAMP32004 1257 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 NOS2P35228 1153 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 APBA1Q02410 837 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 KCNC4Q03721 635 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 CCDC15Q0P6D6 951 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 CLN3Q13286 438 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 CDKN3Q16667 212 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 EFHC1Q5JVL4 640 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 ISM2Q6H9L7 571 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 DPY19L2P1Q6NXN4 242 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 ZCCHC8Q6NZY4 707 aaKnown RBP6.24□□□□□ -1.41
VRK3-220ENST00000600259 GJB7Q6PEY0 223 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 LINGO4Q6UY18 593 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 SLC26A9Q7LBE3 791 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 EFL1Q7Z2Z2 1120 aaKnown RBP6.24□□□□□ -1.41
VRK3-220ENST00000600259 BNIPLQ7Z465 357 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 SETD3Q86TU7 594 aaPredicted RBP6.24□□□□□ -1.41
VRK3-220ENST00000600259 HSCBQ8IWL3 235 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 PLPP6Q8IY26 295 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 SLC35F3Q8IY50 421 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 ELOA2Q8IYF1 753 aaPredicted RBP6.24□□□□□ -1.41
VRK3-220ENST00000600259 DCAF4L2Q8NA75 395 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 ATP11CQ8NB49 1132 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 ZNF397Q8NF99 534 aaPredicted RBP6.24□□□□□ -1.41
VRK3-220ENST00000600259 OR7D4Q8NG98 312 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 MAPK15Q8TD08 544 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 CENPTQ96BT3 561 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 PGAP3Q96FM1 320 aaPredicted RBP6.24□□□□□ -1.41
VRK3-220ENST00000600259 FEM1CQ96JP0 617 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 PPP1R13BQ96KQ4 1090 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 C1orf74Q96LT6 269 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 BOCQ9BWV1 1114 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 CLPBQ9H078 707 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 INTS2Q9H0H0 1204 aaKnown RBP6.24□□□□□ -1.41
VRK3-220ENST00000600259 SIK2Q9H0K1 926 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 ABCG4Q9H172 646 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 TNKS2Q9H2K2 1166 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 TCEAL2Q9H3H9 227 aaPredicted RBP6.24□□□□□ -1.41
VRK3-220ENST00000600259 CLMPQ9H6B4 373 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 FAM204AQ9H8W3 233 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 TMPRSS4Q9NRS4 437 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 DNAJC28Q9NX36 388 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 MAN1B1Q9UKM7 699 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 PCDHGC3Q9UN70 934 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 ACTL7AQ9Y615 435 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 RP1P56715 2156 aa6.24□□□□□ -1.41
VRK3-220ENST00000600259 TDRD6O60522 2096 aaKnown RBP6.23□□□□□ -1.41
VRK3-220ENST00000600259 SYNJ2BP-COX16A0A087WUM0 186 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 ILVBLA1L0T0 632 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 IGLON5A6NGN9 336 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 LMO7DNF2Z398 122 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 M0QYT0 321 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 RIOK3O14730 519 aaKnown RBP6.23□□□□□ -1.41
VRK3-220ENST00000600259 PSMA7O14818 248 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 AREL1O15033 823 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 ARHGAP6O43182 974 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 AQP9O43315 295 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 THAP12O43422 761 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 HSF2BPO75031 334 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 ENDOD1O94919 500 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 AFPP02771 609 aaKnown RBP6.23□□□□□ -1.41
VRK3-220ENST00000600259 ERBB2P04626 1255 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 CENPBP07199 599 aaPredicted RBP6.23□□□□□ -1.41
VRK3-220ENST00000600259 HSP90AA1P07900 732 aaKnown RBP6.23□□□□□ -1.41
VRK3-220ENST00000600259 RHOCP08134 193 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 KRT5P13647 590 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 ADRB3P13945 408 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 JUNDP17535 347 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 SLC9A1P19634 815 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 ITGB7P26010 798 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 GNA15P30679 374 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 CLCN1P35523 988 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 MLLT3P42568 568 aaPredicted RBP6.23□□□□□ -1.41
VRK3-220ENST00000600259 ABL2P42684 1182 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 RABIFP47224 123 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 CLCN6P51797 869 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 NEK3P51956 506 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 RPS21P63220 83 aaKnown RBP6.23□□□□□ -1.41
VRK3-220ENST00000600259 KRT83P78385 493 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 ARF5P84085 180 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 SLC6A3Q01959 620 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 SRSF1Q07955 248 aaKnown RBP eCLIP6.23□□□□□ -1.41
VRK3-220ENST00000600259 SLC20A2Q08357 652 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 CETN1Q12798 172 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 NME3Q13232 169 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 MTA1Q13330 715 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 DRAP1Q14919 205 aaPredicted RBP6.23□□□□□ -1.41
VRK3-220ENST00000600259 DEFB133Q30KQ1 61 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 CCDC40Q4G0X9 1142 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 PTPN20Q4JDL3 420 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 HS1BP3Q53T59 392 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 CARD16Q5EG05 197 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 C3orf38Q5JPI3 329 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 BRMS1LQ5PSV4 323 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 SMYD5Q6GMV2 418 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 KIAA1161Q6NSJ0 714 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 TRNP1Q6NT89 227 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 C22orf39Q6P5X5 142 aa6.23□□□□□ -1.41
VRK3-220ENST00000600259 C11orf57Q6ZUT1 292 aaPredicted RBP6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms