RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 INSCQ1MX18 579 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 IL23RQ5VWK5 629 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 TWF2Q6IBS0 349 aaKnown RBP15.48■□□□□ 0.07
UPF1-204ENST00000596842 DPP9Q86TI2 863 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 WNT8BQ93098 351 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 LENG1Q96BZ8 264 aaPredicted RBP15.48■□□□□ 0.07
UPF1-204ENST00000596842 DCPSQ96C86 337 aaKnown RBP15.48■□□□□ 0.07
UPF1-204ENST00000596842 CAMKK2Q96RR4 588 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 AURKCQ9UQB9 309 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 RAP2CQ9Y3L5 183 aa15.48■□□□□ 0.07
UPF1-204ENST00000596842 SMIM28A0A1B0GU29 152 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 AP2A1O95782 977 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 ATP5BP06576 529 aaKnown RBP15.47■□□□□ 0.07
UPF1-204ENST00000596842 PRPSAP1Q14558 356 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 ESRP1Q6NXG1 681 aaKnown RBP15.47■□□□□ 0.07
UPF1-204ENST00000596842 SLC27A1Q6PCB7 646 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 ARHGAP36Q6ZRI8 547 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 STRADAQ7RTN6 431 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 LDB1Q86U70 411 aaPredicted RBP15.47■□□□□ 0.07
UPF1-204ENST00000596842 OSTM1Q86WC4 334 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 DNAJB3Q8WWF6 145 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 TNIP3Q96KP6 325 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 MRGBPQ9NV56 204 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 OXSMQ9NWU1 459 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 SLC2A6Q9UGQ3 507 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 ACOT9Q9Y305 439 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 PTPRFP10586 1907 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 C9IYK1 514 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 ALOX15P16050 662 aaPredicted RBP15.47■□□□□ 0.07
UPF1-204ENST00000596842 NOS2P35228 1153 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 ADRA1BP35368 520 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 ACADSBP45954 432 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 TAF6P49848 677 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 GJA9P57773 515 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 CACNB2Q08289 660 aaPredicted RBP15.47■□□□□ 0.07
UPF1-204ENST00000596842 ANO4Q32M45 955 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 C6orf183Q5T699 404 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 LIPMQ5VYY2 423 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 SHROOM3Q8TF72 1996 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 KLHL32Q96NJ5 620 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 CIB1Q99828 191 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 TKTL2Q9H0I9 626 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 GPRC5DQ9NZD1 345 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 EPS15L1Q9UBC2 864 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 MATN2O00339 956 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 DDHD2O94830 711 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 SLC4A1P02730 911 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 AHSGP02765 367 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 ZNF772Q68DY9 489 aaPredicted RBP15.47■□□□□ 0.07
UPF1-204ENST00000596842 ZNF470Q6ECI4 717 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 KLHDC10Q6PID8 442 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 OR9I1Q8NGQ6 314 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 MLPHQ9BV36 600 aaPredicted RBP15.47■□□□□ 0.07
UPF1-204ENST00000596842 POMKQ9H5K3 350 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 WDCPQ9H6R7 721 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 GMPR2Q9P2T1 348 aaKnown RBP15.47■□□□□ 0.07
UPF1-204ENST00000596842 OR12D3Q9UGF7 316 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 COPG1Q9Y678 874 aaKnown RBP15.47■□□□□ 0.07
UPF1-204ENST00000596842 V9GYQ6 96 aa15.47■□□□□ 0.07
UPF1-204ENST00000596842 H3BSA7 217 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 MAGEB3O15480 346 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 DYNC1LI2O43237 492 aaPredicted RBP15.46■□□□□ 0.07
UPF1-204ENST00000596842 MPOP05164 745 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 PABPC4LP0CB38 370 aaKnown RBP15.46■□□□□ 0.07
UPF1-204ENST00000596842 HOXA11P31270 313 aaPredicted RBP15.46■□□□□ 0.07
UPF1-204ENST00000596842 CXCR3P49682 368 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 CCNA1P78396 465 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 PPP1R3AQ16821 1122 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 HASPINQ8TF76 798 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 LRTOMTQ8WZ04 291 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 CCT7Q99832 543 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 FICDQ9BVA6 458 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 UBQLN1Q9UMX0 589 aaKnown RBP15.46■□□□□ 0.07
UPF1-204ENST00000596842 USP3Q9Y6I4 520 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 BRCA2P51587 3418 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 TRIM43BA6NCK2 446 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 NDUFB5O43674 189 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 DLX3O60479 287 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 SLC25A27O95847 323 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 CD68P34810 354 aaPredicted RBP15.46■□□□□ 0.07
UPF1-204ENST00000596842 CHRNA4P43681 627 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 RPL5P46777 297 aaKnown RBP15.46■□□□□ 0.07
UPF1-204ENST00000596842 HNRNPDQ14103 355 aaKnown RBP15.46■□□□□ 0.07
UPF1-204ENST00000596842 FBXO48Q5FWF7 155 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 PRAMEF19Q5SWL8 479 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 NOTUMQ6P988 496 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 IFNEQ86WN2 208 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 GRIN3AQ8TCU5 1115 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 SNX27Q96L92 541 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 FSD1LQ9BXM9 530 aa15.46■□□□□ 0.07
UPF1-204ENST00000596842 AURKAO14965 403 aa15.46■□□□□ 0.06
UPF1-204ENST00000596842 RNASEH2AO75792 299 aaKnown RBP15.46■□□□□ 0.06
UPF1-204ENST00000596842 CNMDO75829 334 aa15.46■□□□□ 0.06
UPF1-204ENST00000596842 TFAP2AP05549 437 aa15.46■□□□□ 0.06
UPF1-204ENST00000596842 FAM58BPP0C7Q3 252 aa15.46■□□□□ 0.06
UPF1-204ENST00000596842 NPR3P17342 541 aa15.46■□□□□ 0.06
UPF1-204ENST00000596842 EPHX2P34913 555 aa15.46■□□□□ 0.06
UPF1-204ENST00000596842 CDK18Q07002 472 aa15.46■□□□□ 0.06
UPF1-204ENST00000596842 PRKAA1Q13131 559 aa15.46■□□□□ 0.06
UPF1-204ENST00000596842 MTX3Q5HYI7 312 aa15.46■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms