RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 GOLGA6BA6NDN3 693 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 TMEM63AO94886 807 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 GOLGA6DP0CG33 693 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 POLR2EP19388 210 aaKnown RBP14.89□□□□□ -0.03
VRK3-212ENST00000596814 TPSB2P20231 275 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 HSPA9P38646 679 aaKnown RBP14.89□□□□□ -0.03
VRK3-212ENST00000596814 SLC6A11P48066 632 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 KDSRQ06136 332 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 ITKQ08881 620 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 CYTH1Q15438 398 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 TPSAB1Q15661 275 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 SYCP2LQ5T4T6 812 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 METTL3Q86U44 580 aaKnown RBP14.89□□□□□ -0.03
VRK3-212ENST00000596814 PGBD5Q8N414 524 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.89□□□□□ -0.03
VRK3-212ENST00000596814 TSEN2Q8NCE0 465 aaKnown RBP14.89□□□□□ -0.03
VRK3-212ENST00000596814 GORASP1Q9BQQ3 440 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 SLC25A51Q9H1U9 297 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 KCNK12Q9HB15 430 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 EIF2B3Q9NR50 452 aaKnown RBP14.89□□□□□ -0.03
VRK3-212ENST00000596814 GOLGA6AQ9NYA3 693 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 LIMD1Q9UGP4 676 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.89□□□□□ -0.03
VRK3-212ENST00000596814 DYNC1I1O14576 645 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 MUSKO15146 869 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 MT-CO1P00395 513 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 IL9P15248 144 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 OPRD1P41143 372 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 EIF2DP41214 584 aaKnown RBP14.89□□□□□ -0.03
VRK3-212ENST00000596814 CTSOP43234 321 aaPredicted RBP14.89□□□□□ -0.03
VRK3-212ENST00000596814 ECT2LQ008S8 904 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 SLC20A2Q08357 652 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 ALG1LQ6GMV1 187 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 ATP11CQ8NB49 1132 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 AENQ8WTP8 325 aaKnown RBP14.89□□□□□ -0.03
VRK3-212ENST00000596814 TTC17Q96AE7 1141 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 HS3ST2Q9Y278 367 aa14.89□□□□□ -0.03
VRK3-212ENST00000596814 AAR2Q9Y312 384 aaKnown RBP14.89□□□□□ -0.03
VRK3-212ENST00000596814 FCF1Q9Y324 198 aaKnown RBP14.89□□□□□ -0.03
VRK3-212ENST00000596814 ERI2A8K979 691 aaKnown RBP14.88□□□□□ -0.03
VRK3-212ENST00000596814 GOLGA8MH3BSY2 632 aa14.88□□□□□ -0.03
VRK3-212ENST00000596814 ANXA9O76027 345 aa14.88□□□□□ -0.03
VRK3-212ENST00000596814 AP2A1O95782 977 aa14.88□□□□□ -0.03
VRK3-212ENST00000596814 H2AFXP16104 143 aaPredicted RBP14.88□□□□□ -0.03
VRK3-212ENST00000596814 STK19P49842 368 aaPredicted RBP14.88□□□□□ -0.03
VRK3-212ENST00000596814 RHOAP61586 193 aa14.88□□□□□ -0.03
VRK3-212ENST00000596814 CDK16Q00536 496 aa14.88□□□□□ -0.03
VRK3-212ENST00000596814 DSC2Q02487 901 aa14.88□□□□□ -0.03
VRK3-212ENST00000596814 TFF2Q03403 129 aa14.88□□□□□ -0.03
VRK3-212ENST00000596814 TMEM215Q68D42 235 aa14.88□□□□□ -0.03
VRK3-212ENST00000596814 EMBQ6PCB8 327 aa14.88□□□□□ -0.03
VRK3-212ENST00000596814 FBXO38Q6PIJ6 1188 aa14.88□□□□□ -0.03
VRK3-212ENST00000596814 PPP1R21Q6ZMI0 780 aa14.88□□□□□ -0.03
VRK3-212ENST00000596814 KLHDC8BQ8IXV7 354 aa14.88□□□□□ -0.03
VRK3-212ENST00000596814 ZCCHC9Q8N567 271 aaKnown RBP14.88□□□□□ -0.03
VRK3-212ENST00000596814 PDCD7Q8N8D1 485 aaKnown RBP14.88□□□□□ -0.03
VRK3-212ENST00000596814 TERB1Q8NA31 727 aa14.88□□□□□ -0.03
VRK3-212ENST00000596814 SPATA22Q8NHS9 363 aa14.88□□□□□ -0.03
VRK3-212ENST00000596814 IMP4Q96G21 291 aaKnown RBP14.88□□□□□ -0.03
VRK3-212ENST00000596814 OXNAD1Q96HP4 312 aaPredicted RBP14.88□□□□□ -0.03
VRK3-212ENST00000596814 EXOC2Q96KP1 924 aa14.88□□□□□ -0.03
VRK3-212ENST00000596814 RPL10LQ96L21 214 aaKnown RBP14.88□□□□□ -0.03
VRK3-212ENST00000596814 SEMA3CQ99985 751 aa14.88□□□□□ -0.03
VRK3-212ENST00000596814 MLPHQ9BV36 600 aaPredicted RBP14.88□□□□□ -0.03
VRK3-212ENST00000596814 FOXP3Q9BZS1 431 aa14.88□□□□□ -0.03
VRK3-212ENST00000596814 CIPCQ9C0C6 399 aa14.88□□□□□ -0.03
VRK3-212ENST00000596814 LHX3Q9UBR4 397 aa14.88□□□□□ -0.03
VRK3-212ENST00000596814 K7ERQ8 282 aa14.87□□□□□ -0.03
VRK3-212ENST00000596814 PSMD3O43242 534 aa14.87□□□□□ -0.03
VRK3-212ENST00000596814 MT-CYBP00156 380 aaPredicted RBP14.87□□□□□ -0.03
VRK3-212ENST00000596814 ASLP04424 464 aa14.87□□□□□ -0.03
VRK3-212ENST00000596814 FAM153BP0C7A2 387 aa14.87□□□□□ -0.03
VRK3-212ENST00000596814 SRCP12931 536 aa14.87□□□□□ -0.03
VRK3-212ENST00000596814 RGRP47804 291 aa14.87□□□□□ -0.03
VRK3-212ENST00000596814 GEMP55040 296 aa14.87□□□□□ -0.03
VRK3-212ENST00000596814 NIPAL4Q0D2K0 466 aa14.87□□□□□ -0.03
VRK3-212ENST00000596814 MESP2Q0VG99 397 aa14.87□□□□□ -0.03
VRK3-212ENST00000596814 EIF4HQ15056 248 aaKnown RBP14.87□□□□□ -0.03
VRK3-212ENST00000596814 FAM153CQ494X1 144 aa14.87□□□□□ -0.03
VRK3-212ENST00000596814 PREPLQ4J6C6 727 aaPredicted RBP14.87□□□□□ -0.03
VRK3-212ENST00000596814 NAIF1Q69YI7 327 aaPredicted RBP14.87□□□□□ -0.03
VRK3-212ENST00000596814 PHTF2Q8N3S3 785 aa14.87□□□□□ -0.03
VRK3-212ENST00000596814 SLC44A3Q8N4M1 653 aa14.87□□□□□ -0.03
VRK3-212ENST00000596814 SH2D3CQ8N5H7 860 aa14.87□□□□□ -0.03
VRK3-212ENST00000596814 ARRDC2Q8TBH0 407 aa14.87□□□□□ -0.03
VRK3-212ENST00000596814 CHFRQ96EP1 664 aa14.87□□□□□ -0.03
VRK3-212ENST00000596814 RBM15Q96T37 977 aaKnown RBP eCLIP14.87□□□□□ -0.033e-6■■■■□ 20.8
VRK3-212ENST00000596814 LRRC40Q9H9A6 602 aa14.87□□□□□ -0.03
VRK3-212ENST00000596814 UBP1Q9NZI7 540 aa14.87□□□□□ -0.03
VRK3-212ENST00000596814 FAM153AQ9UHL3 310 aa14.87□□□□□ -0.03
VRK3-212ENST00000596814 PRUNE2Q8WUY3 3088 aa14.87□□□□□ -0.03
VRK3-212ENST00000596814 SMAD6O43541 496 aaKnown RBP14.86□□□□□ -0.03
VRK3-212ENST00000596814 ATP5BP06576 529 aaKnown RBP14.86□□□□□ -0.03
VRK3-212ENST00000596814 ASGR2P07307 311 aa14.86□□□□□ -0.03
VRK3-212ENST00000596814 CD86P42081 329 aa14.86□□□□□ -0.03
VRK3-212ENST00000596814 SOX9P48436 509 aa14.86□□□□□ -0.03
VRK3-212ENST00000596814 SARNPP82979 210 aaKnown RBP14.86□□□□□ -0.03
VRK3-212ENST00000596814 MPP3Q13368 585 aa14.86□□□□□ -0.03
VRK3-212ENST00000596814 HIF1AQ16665 826 aa14.86□□□□□ -0.03
VRK3-212ENST00000596814 KCTD11Q693B1 232 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms