RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 SKOR1P84550 965 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 DSC2Q02487 901 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 PPARDQ03181 441 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 GABPB1Q06547 395 aaPredicted RBP10.69□□□□□ -0.7
SS18-217ENST00000580958 TNK2Q07912 1038 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 NIPAL4Q0D2K0 466 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 ZNF235Q14590 738 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 RAB30Q15771 203 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 DUSP6Q16828 381 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 PPP2R2DQ66LE6 453 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 STEAP4Q687X5 459 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 NAPEPLDQ6IQ20 393 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 ELMSAN1Q6PJG2 1045 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 KDELC1Q6UW63 502 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 SETD3Q86TU7 594 aaPredicted RBP10.69□□□□□ -0.7
SS18-217ENST00000580958 PRPF39Q86UA1 669 aaKnown RBP10.69□□□□□ -0.7
SS18-217ENST00000580958 PGBD5Q8N414 524 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 CPXM2Q8N436 756 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 C12orf76Q8N812 135 aaPredicted RBP10.69□□□□□ -0.7
SS18-217ENST00000580958 DNAAF3Q8N9W5 541 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 TDRD5Q8NAT2 981 aaKnown RBP10.69□□□□□ -0.7
SS18-217ENST00000580958 LEMD2Q8NC56 503 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 GSDMBQ8TAX9 411 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 SH3RF2Q8TEC5 729 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 MRGPRX2Q96LB1 330 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 ZNF599Q96NL3 588 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 PPP1R2P1Q96PQ5 205 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 CYTH2Q99418 400 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 ACE2Q9BYF1 805 aaPredicted RBP10.69□□□□□ -0.7
SS18-217ENST00000580958 MUC3BQ9H195 1237 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 ZDHHC7Q9NXF8 308 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 PSMC3IPQ9P2W1 217 aaPredicted RBP10.69□□□□□ -0.7
SS18-217ENST00000580958 UBA2Q9UBT2 640 aaPredicted RBP10.69□□□□□ -0.7
SS18-217ENST00000580958 DPP7Q9UHL4 492 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 CCL26Q9Y258 94 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 TBC1D30Q9Y2I9 924 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 ACTL7AQ9Y615 435 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 KIF26AQ9ULI4 1882 aaPredicted RBP10.69□□□□□ -0.7
SS18-217ENST00000580958 DOCK8Q8NF50 2099 aa10.69□□□□□ -0.7
SS18-217ENST00000580958 CHD7Q9P2D1 2997 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 TTC24A2A3L6 582 aaPredicted RBP10.68□□□□□ -0.7
SS18-217ENST00000580958 CXorf49A8MYA2 514 aaPredicted RBP10.68□□□□□ -0.7
SS18-217ENST00000580958 H0Y626 953 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 C1QAP02745 245 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 MMP2P08253 660 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 TPH1P17752 444 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 PGAM1P18669 254 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 MZF1P28698 734 aaPredicted RBP10.68□□□□□ -0.7
SS18-217ENST00000580958 ATP5DP30049 168 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 ADRA1AP35348 466 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 AVPR1AP37288 418 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 CD86P42081 329 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 MSH2P43246 934 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 NPY2RP49146 381 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 WNT3AP56704 352 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 CDH17Q12864 832 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 MPP3Q13368 585 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 PCSK7Q16549 785 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 KBTBD12Q3ZCT8 623 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 FSCBQ5H9T9 825 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 CERCAMQ5T4B2 595 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 COL13A1Q5TAT6 717 aaPredicted RBP10.68□□□□□ -0.7
SS18-217ENST00000580958 TRMT10BQ6PF06 316 aaKnown RBP10.68□□□□□ -0.7
SS18-217ENST00000580958 CES3Q6UWW8 571 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 LINC00523Q86TU6 105 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 EXOC3L1Q86VI1 746 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 CMTM8Q8IZV2 173 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 ARFGAP2Q8N6H7 521 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 PPM1NQ8N819 430 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 RIN3Q8TB24 985 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 WFDC5Q8TCV5 224 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 DDI1Q8WTU0 396 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 ING5Q8WYH8 240 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 SMG7Q92540 1137 aaKnown RBP10.68□□□□□ -0.7
SS18-217ENST00000580958 USP13Q92995 863 aaPredicted RBP10.68□□□□□ -0.7
SS18-217ENST00000580958 BHMTQ93088 406 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 ZNF669Q96BR6 464 aaPredicted RBP10.68□□□□□ -0.7
SS18-217ENST00000580958 IMP4Q96G21 291 aaKnown RBP10.68□□□□□ -0.7
SS18-217ENST00000580958 PAFAH2Q99487 392 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 GDF15Q99988 308 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 SELENOSQ9BQE4 189 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 DHRS4Q9BTZ2 278 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 CINPQ9BW66 212 aaPredicted RBP10.68□□□□□ -0.7
SS18-217ENST00000580958 PPCSQ9HAB8 311 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 PIDD1Q9HB75 910 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 SMYD2Q9NRG4 433 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 BFARQ9NZS9 450 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 FETUBQ9UGM5 382 aa10.68□□□□□ -0.7
SS18-217ENST00000580958 LAMA2P24043 3122 aaKnown RBP10.68□□□□□ -0.7
SS18-217ENST00000580958 PRRC2BQ5JSZ5 2229 aaKnown RBP10.68□□□□□ -0.7
SS18-217ENST00000580958 E2F8A0AVK6 867 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 SOBPA7XYQ1 873 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 CBX4O00257 560 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 RFXAPO00287 272 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 MUSKO15146 869 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 ATP9BO43861 1147 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 SNAP91O60641 907 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 PRAMEF12O95522 483 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 PRKCHP24723 683 aa10.67□□□□□ -0.7
SS18-217ENST00000580958 CSKP41240 450 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms