RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 MSRAQ9UJ68 235 aa12.92□□□□□ -0.34
CDK5RAP3-217ENST00000580287 MAFFQ9ULX9 164 aa12.92□□□□□ -0.34
CDK5RAP3-217ENST00000580287 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 A0A0A0MRY4 1105 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 FGF10O15520 208 aaPredicted RBP12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 USP12O75317 370 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 GCATO75600 419 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 RHOQP17081 205 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 KPNA1P52294 538 aaPredicted RBP12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 SMAD1Q15797 465 aaKnown RBP12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 OTOP3Q7RTS5 596 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 ZNF276Q8N554 614 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 CNTD1Q8N815 330 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 PPM1NQ8N819 430 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 SPATA13Q96N96 652 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 PHACTR1Q9C0D0 580 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 PPCSQ9HAB8 311 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 KLHL8Q9P2G9 620 aaPredicted RBP12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 SMG5Q9UPR3 1016 aaKnown RBP12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 SH3BP1Q9Y3L3 701 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 TEX264Q9Y6I9 313 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 DRGXA6NNA5 263 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 HACD1B0YJ81 288 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 SUN1O94901 812 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 KRT16P08779 473 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 PTPN2P17706 415 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 CD68P34810 354 aaPredicted RBP12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 PPP3CCP48454 512 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 NRG1Q02297 640 aaPredicted RBP12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 OVGP1Q12889 678 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 ADGRF1Q5T601 910 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 ADGRD1Q6QNK2 874 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 TPGS1Q6ZTW0 290 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 BBS7Q8IWZ6 715 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 AGGF1Q8N302 714 aaeCLIP12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 ATPAF2Q8N5M1 289 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 PDCD7Q8N8D1 485 aaKnown RBP12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 ITFG1Q8TB96 612 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 ZNF707Q96C28 371 aaPredicted RBP12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 HDAC11Q96DB2 347 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 STAMBPL1Q96FJ0 436 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 TMEM237Q96Q45 408 aa12.91□□□□□ -0.34
CDK5RAP3-217ENST00000580287 GJB3O75712 270 aa12.9□□□□□ -0.34
CDK5RAP3-217ENST00000580287 ASMTLO95671 621 aa12.9□□□□□ -0.34
CDK5RAP3-217ENST00000580287 OLFM2O95897 454 aa12.9□□□□□ -0.34
CDK5RAP3-217ENST00000580287 MT-ND3P03897 115 aa12.9□□□□□ -0.34
CDK5RAP3-217ENST00000580287 GSTA1P08263 222 aa12.9□□□□□ -0.34
CDK5RAP3-217ENST00000580287 MX2P20592 715 aa12.9□□□□□ -0.34
CDK5RAP3-217ENST00000580287 GLDCP23378 1020 aa12.9□□□□□ -0.34
CDK5RAP3-217ENST00000580287 NAA25Q14CX7 972 aa12.9□□□□□ -0.34
CDK5RAP3-217ENST00000580287 FSCBQ5H9T9 825 aa12.9□□□□□ -0.34
CDK5RAP3-217ENST00000580287 CASC4Q6P4E1 433 aa12.9□□□□□ -0.34
CDK5RAP3-217ENST00000580287 LVRNQ6Q4G3 990 aa12.9□□□□□ -0.34
CDK5RAP3-217ENST00000580287 PRPF39Q86UA1 669 aaKnown RBP12.9□□□□□ -0.34
CDK5RAP3-217ENST00000580287 OR7D4Q8NG98 312 aa12.9□□□□□ -0.34
CDK5RAP3-217ENST00000580287 DCAKDQ8WVC6 231 aa12.9□□□□□ -0.34
CDK5RAP3-217ENST00000580287 PLD4Q96BZ4 506 aa12.9□□□□□ -0.34
CDK5RAP3-217ENST00000580287 PABPC5Q96DU9 382 aaKnown RBP12.9□□□□□ -0.34
CDK5RAP3-217ENST00000580287 GORASP1Q9BQQ3 440 aa12.9□□□□□ -0.34
CDK5RAP3-217ENST00000580287 TMEM248Q9NWD8 314 aa12.9□□□□□ -0.34
CDK5RAP3-217ENST00000580287 IPO11Q9UI26 975 aaKnown RBP12.9□□□□□ -0.34
CDK5RAP3-217ENST00000580287 TRIOBPQ9H2D6 2365 aa12.9□□□□□ -0.34
CDK5RAP3-217ENST00000580287 LINC01565O15544 149 aa12.9□□□□□ -0.35
CDK5RAP3-217ENST00000580287 PRPF4O43172 522 aaKnown RBP eCLIP12.9□□□□□ -0.353e-6■■□□□ 13.5
CDK5RAP3-217ENST00000580287 FAM155BO75949 473 aa12.9□□□□□ -0.35
CDK5RAP3-217ENST00000580287 NEBLO76041 1014 aa12.9□□□□□ -0.35
CDK5RAP3-217ENST00000580287 PRAMEF12O95522 483 aa12.9□□□□□ -0.35
CDK5RAP3-217ENST00000580287 ADRA1DP25100 572 aa12.9□□□□□ -0.35
CDK5RAP3-217ENST00000580287 ZNF135P52742 658 aaPredicted RBP12.9□□□□□ -0.35
CDK5RAP3-217ENST00000580287 KDELC2Q7Z4H8 507 aa12.9□□□□□ -0.35
CDK5RAP3-217ENST00000580287 CAND1Q86VP6 1230 aaKnown RBP12.9□□□□□ -0.35
CDK5RAP3-217ENST00000580287 SPATA22Q8NHS9 363 aa12.9□□□□□ -0.35
CDK5RAP3-217ENST00000580287 LRRC8CQ8TDW0 803 aa12.9□□□□□ -0.35
CDK5RAP3-217ENST00000580287 APOL2Q9BQE5 337 aa12.9□□□□□ -0.35
CDK5RAP3-217ENST00000580287 PPARGC1AQ9UBK2 798 aaKnown RBP12.9□□□□□ -0.35
CDK5RAP3-217ENST00000580287 CLEC4EQ9ULY5 219 aa12.9□□□□□ -0.35
CDK5RAP3-217ENST00000580287 NUMBLQ9Y6R0 609 aa12.9□□□□□ -0.35
CDK5RAP3-217ENST00000580287 CCNB1P14635 433 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 CDC25CP30307 473 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 ETFBP38117 255 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 MAXP61244 160 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 CRADDP78560 199 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 POLD3Q15054 466 aaPredicted RBP12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 TEX44Q53QW1 395 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 AFMIDQ63HM1 303 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 ARMCX6Q7L4S7 300 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 WFDC5Q8TCV5 224 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 GCNAQ96QF7 691 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 SPON2Q9BUD6 331 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 EBF2Q9HAK2 575 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 PIDD1Q9HB75 910 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 SLC17A7Q9P2U7 560 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 PHTF1Q9UMS5 762 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 ANAPC1Q9H1A4 1944 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 TRAV19A0A0A6YYK7 116 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 IQANK1A0A1B0GTG1 560 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 LEFTY2O00292 366 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 RAMP2O60895 175 aa12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 MT-CYBP00156 380 aaPredicted RBP12.89□□□□□ -0.35
CDK5RAP3-217ENST00000580287 NEFHP12036 1026 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms