RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 DDX42Q86XP3 938 aaKnown RBP eCLIP10.41□□□□□ -0.74
SS18-207ENST00000577636 SLC41A1Q8IVJ1 513 aa10.41□□□□□ -0.74
SS18-207ENST00000577636 CDKL3Q8IVW4 592 aaPredicted RBP10.41□□□□□ -0.74
SS18-207ENST00000577636 CHPFQ8IZ52 775 aa10.41□□□□□ -0.74
SS18-207ENST00000577636 MREGQ8N565 214 aa10.41□□□□□ -0.74
SS18-207ENST00000577636 MDM1Q8TC05 714 aa10.41□□□□□ -0.74
SS18-207ENST00000577636 NDRG1Q92597 394 aaKnown RBP10.41□□□□□ -0.74
SS18-207ENST00000577636 EDEM1Q92611 657 aa10.41□□□□□ -0.74
SS18-207ENST00000577636 PGAP3Q96FM1 320 aaPredicted RBP10.41□□□□□ -0.74
SS18-207ENST00000577636 HERPUD2Q9BSE4 406 aa10.41□□□□□ -0.74
SS18-207ENST00000577636 FOXP3Q9BZS1 431 aa10.41□□□□□ -0.74
SS18-207ENST00000577636 SLC6A17Q9H1V8 727 aa10.41□□□□□ -0.74
SS18-207ENST00000577636 WDCPQ9H6R7 721 aa10.41□□□□□ -0.74
SS18-207ENST00000577636 CAPN10Q9HC96 672 aa10.41□□□□□ -0.74
SS18-207ENST00000577636 MED4Q9NPJ6 270 aa10.41□□□□□ -0.74
SS18-207ENST00000577636 OLA1Q9NTK5 396 aaKnown RBP10.41□□□□□ -0.74
SS18-207ENST00000577636 GPATCH2LQ9NWQ4 482 aa10.41□□□□□ -0.74
SS18-207ENST00000577636 TBC1D14Q9P2M4 693 aa10.41□□□□□ -0.74
SS18-207ENST00000577636 DNPEPQ9ULA0 475 aa10.41□□□□□ -0.74
SS18-207ENST00000577636 FZD10Q9ULW2 581 aa10.41□□□□□ -0.74
SS18-207ENST00000577636 RAD54BQ9Y620 910 aa10.41□□□□□ -0.74
SS18-207ENST00000577636 OBSL1O75147 1896 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 MYO16Q9Y6X6 1858 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 IGF2RP11717 2491 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 A0A0A0MRY4 1105 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 FAM221BA6H8Z2 402 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 GOLGA8CPA6NN73 597 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 BHMG1C9JSJ3 638 aaPredicted RBP10.4□□□□□ -0.74
SS18-207ENST00000577636 SMAPO00193 183 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 EEF2KO00418 725 aaKnown RBP10.4□□□□□ -0.74
SS18-207ENST00000577636 TULP3O75386 442 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 OAS1P00973 400 aaKnown RBP10.4□□□□□ -0.74
SS18-207ENST00000577636 IFNB1P01574 187 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 CD48P09326 243 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 RBP3P10745 1247 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 SLC2A3P11169 496 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 YWHAQP27348 245 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 NTSR1P30989 418 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 ADRA1BP35368 520 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 HOXD12P35452 270 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 HSPA9P38646 679 aaKnown RBP10.4□□□□□ -0.74
SS18-207ENST00000577636 RPL21P46778 160 aaKnown RBP10.4□□□□□ -0.74
SS18-207ENST00000577636 ARSEP51690 589 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 DHX9Q08211 1270 aaKnown RBP10.4□□□□□ -0.74
SS18-207ENST00000577636 MTA1Q13330 715 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 TRIP13Q15645 432 aaPredicted RBP10.4□□□□□ -0.74
SS18-207ENST00000577636 PREPLQ4J6C6 727 aaPredicted RBP10.4□□□□□ -0.74
SS18-207ENST00000577636 BRMS1LQ5PSV4 323 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 SYCP2LQ5T4T6 812 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 PEAR1Q5VY43 1037 aaPredicted RBP10.4□□□□□ -0.74
SS18-207ENST00000577636 EGFLAMQ63HQ2 1017 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 SLC9A4Q6AI14 798 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 KIAA1324Q6UXG2 1013 aaKnown RBP10.4□□□□□ -0.74
SS18-207ENST00000577636 C4orf22Q6V702 233 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 CYP4V2Q6ZWL3 525 aaPredicted RBP10.4□□□□□ -0.74
SS18-207ENST00000577636 RABEPKQ7Z6M1 372 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 TADA2BQ86TJ2 420 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 TMEM25Q86YD3 366 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 MIB1Q86YT6 1006 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 CCDC185Q8N715 623 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 SLC35B2Q8TB61 432 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 FAM71BQ8TC56 605 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 SETD7Q8WTS6 366 aaKnown RBP10.4□□□□□ -0.74
SS18-207ENST00000577636 FBXO32Q969P5 355 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 LRIG1Q96JA1 1093 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 SERPINB11Q96P15 392 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 CDK5RAP1Q96SZ6 601 aaKnown RBP10.4□□□□□ -0.74
SS18-207ENST00000577636 ACOX2Q99424 681 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 EPAS1Q99814 870 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 FAM118BQ9BPY3 351 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 TTLL2Q9BWV7 592 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 NACA2Q9H009 215 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 MIR1-1HGQ9H1L0 117 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 PCDH9Q9HC56 1237 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 CD93Q9NPY3 652 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 DNAAF2Q9NVR5 837 aaKnown RBP10.4□□□□□ -0.74
SS18-207ENST00000577636 SLC12A6Q9UHW9 1150 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 HPCAL4Q9UM19 191 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 SCML2Q9UQR0 700 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 HEY1Q9Y5J3 304 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 CEP295Q9C0D2 2601 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 ADAMTS9Q9P2N4 1935 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 CACNA1EQ15878 2313 aa10.4□□□□□ -0.74
SS18-207ENST00000577636 WDFY3Q8IZQ1 3526 aa10.4□□□□□ -0.75
SS18-207ENST00000577636 ZZEF1O43149 2961 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 MYOFQ9NZM1 2061 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 E2F8A0AVK6 867 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 COCHO43405 550 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 CREB3O43889 395 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 ZNF217O75362 1048 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 OLFM2O95897 454 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 CAPNS1P04632 268 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 FAM153BP0C7A2 387 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 CHRM1P11229 460 aaPredicted RBP10.39□□□□□ -0.75
SS18-207ENST00000577636 GNSP15586 552 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 NDUFV2P19404 249 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 TFE3P19532 575 aaPredicted RBP10.39□□□□□ -0.75
SS18-207ENST00000577636 CCR1P32246 355 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 HTR7P34969 479 aa10.39□□□□□ -0.75
SS18-207ENST00000577636 HCAR3P49019 387 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms