RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 HDAC3O15379 428 aa9.71□□□□□ -0.85
CCDC40-212ENST00000574799 HTRA2O43464 458 aaPredicted RBP9.71□□□□□ -0.85
CCDC40-212ENST00000574799 LRCH4O75427 683 aa9.71□□□□□ -0.85
CCDC40-212ENST00000574799 DAB1O75553 588 aa9.71□□□□□ -0.85
CCDC40-212ENST00000574799 GARTP22102 1010 aa9.71□□□□□ -0.85
CCDC40-212ENST00000574799 NAGLUP54802 743 aa9.71□□□□□ -0.85
CCDC40-212ENST00000574799 STX5Q13190 355 aa9.71□□□□□ -0.85
CCDC40-212ENST00000574799 INPP5AQ14642 412 aa9.71□□□□□ -0.85
CCDC40-212ENST00000574799 ZACNQ401N2 412 aa9.71□□□□□ -0.85
CCDC40-212ENST00000574799 OTUD3Q5T2D3 398 aaPredicted RBP9.71□□□□□ -0.85
CCDC40-212ENST00000574799 MOCOSQ96EN8 888 aa9.71□□□□□ -0.85
CCDC40-212ENST00000574799 KLHL32Q96NJ5 620 aa9.71□□□□□ -0.85
CCDC40-212ENST00000574799 DACH2Q96NX9 599 aa9.71□□□□□ -0.85
CCDC40-212ENST00000574799 EBNA1BP2Q99848 306 aaKnown RBP9.71□□□□□ -0.85
CCDC40-212ENST00000574799 MINDY3Q9H8M7 445 aa9.71□□□□□ -0.85
CCDC40-212ENST00000574799 CROCCQ5TZA2 2017 aa9.71□□□□□ -0.86
CCDC40-212ENST00000574799 H3BMQ9 156 aa9.71□□□□□ -0.86
CCDC40-212ENST00000574799 MAFO75444 373 aaPredicted RBP9.71□□□□□ -0.86
CCDC40-212ENST00000574799 SRP72O76094 671 aaKnown RBP9.71□□□□□ -0.86
CCDC40-212ENST00000574799 MFN2O95140 757 aa9.71□□□□□ -0.86
CCDC40-212ENST00000574799 ERVK-10P10266 1014 aa9.71□□□□□ -0.86
CCDC40-212ENST00000574799 PDGFRAP16234 1089 aa9.71□□□□□ -0.86
CCDC40-212ENST00000574799 IL1R2P27930 398 aa9.71□□□□□ -0.86
CCDC40-212ENST00000574799 TCF7P36402 384 aaPredicted RBP9.71□□□□□ -0.86
CCDC40-212ENST00000574799 ENPEPQ07075 957 aa9.71□□□□□ -0.86
CCDC40-212ENST00000574799 FAM47CQ5HY64 1035 aa9.71□□□□□ -0.86
CCDC40-212ENST00000574799 TAPT1Q6NXT6 567 aa9.71□□□□□ -0.86
CCDC40-212ENST00000574799 KCNT2Q6UVM3 1135 aa9.71□□□□□ -0.86
CCDC40-212ENST00000574799 ABRAXAS1Q6UWZ7 409 aa9.71□□□□□ -0.86
CCDC40-212ENST00000574799 GK5Q6ZS86 529 aa9.71□□□□□ -0.86
CCDC40-212ENST00000574799 CHERPQ8IWX8 916 aaKnown RBP9.71□□□□□ -0.86
CCDC40-212ENST00000574799 MPP5Q8N3R9 675 aa9.71□□□□□ -0.86
CCDC40-212ENST00000574799 MAGEE2Q8TD90 523 aaPredicted RBP9.71□□□□□ -0.86
CCDC40-212ENST00000574799 ZNF778Q96MU6 729 aa9.71□□□□□ -0.86
CCDC40-212ENST00000574799 COG8Q96MW5 612 aa9.71□□□□□ -0.86
CCDC40-212ENST00000574799 ADI1Q9BV57 179 aa9.71□□□□□ -0.86
CCDC40-212ENST00000574799 NAA50Q9GZZ1 169 aaKnown RBP9.71□□□□□ -0.86
CCDC40-212ENST00000574799 POPDC2Q9HBU9 364 aa9.71□□□□□ -0.86
CCDC40-212ENST00000574799 SUN2Q9UH99 717 aa9.71□□□□□ -0.86
CCDC40-212ENST00000574799 ZNHIT2Q9UHR6 403 aa9.71□□□□□ -0.86
CCDC40-212ENST00000574799 CNTN6Q9UQ52 1028 aa9.71□□□□□ -0.86
CCDC40-212ENST00000574799 KCNU1A8MYU2 1149 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 CSDE1O75534 798 aaKnown RBP9.7□□□□□ -0.86
CCDC40-212ENST00000574799 BCAS2O75934 225 aaPredicted RBP9.7□□□□□ -0.86
CCDC40-212ENST00000574799 ALBP02768 609 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 RCVRNP35243 200 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 OSTNP61366 133 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 RAB39AQ14964 217 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 NDUFA5Q16718 116 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 EEPD1Q7L9B9 569 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 HTRA1Q92743 480 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 TCF12Q99081 682 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 SMARCAD1Q9H4L7 1026 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 FBXO40Q9UH90 709 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 SLC39A10Q9ULF5 831 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 TRIP12Q14669 1992 aaPredicted RBP9.7□□□□□ -0.86
CCDC40-212ENST00000574799 ZNF638Q14966 1978 aaKnown RBP9.7□□□□□ -0.86
CCDC40-212ENST00000574799 A0A096LPK6 155 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 SLC15A5A6NIM6 579 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 NOTOA8MTQ0 251 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 K7ERI5 159 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 PLOD2O00469 737 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 CAPN15O75808 1086 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 CST3P01034 146 aaPredicted RBP9.7□□□□□ -0.86
CCDC40-212ENST00000574799 CHRNGP07510 517 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 CYP2C8P10632 490 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 ALDH3B2P48448 385 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 RPL14P50914 215 aaKnown RBP9.7□□□□□ -0.86
CCDC40-212ENST00000574799 NKX2-5P52952 324 aaPredicted RBP9.7□□□□□ -0.86
CCDC40-212ENST00000574799 NME5P56597 212 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 LSM3P62310 102 aaKnown RBP9.7□□□□□ -0.86
CCDC40-212ENST00000574799 PMS2P3Q13401 168 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 PCLAFQ15004 111 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 KCNJ8Q15842 424 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 ZIK1Q3SY52 487 aaPredicted RBP9.7□□□□□ -0.86
CCDC40-212ENST00000574799 GJC2Q5T442 439 aaPredicted RBP9.7□□□□□ -0.86
CCDC40-212ENST00000574799 JADE1Q6IE81 842 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 ELMSAN1Q6PJG2 1045 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 CDR2LQ86X02 465 aaPredicted RBP9.7□□□□□ -0.86
CCDC40-212ENST00000574799 TBC1D15Q8TC07 691 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 TRAPPC12Q8WVT3 735 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 OLFM1Q99784 485 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 TRIM15Q9C019 465 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 INO80BQ9C086 356 aaPredicted RBP9.7□□□□□ -0.86
CCDC40-212ENST00000574799 CXCL16Q9H2A7 254 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 RPF2Q9H7B2 306 aaKnown RBP9.7□□□□□ -0.86
CCDC40-212ENST00000574799 CARD8Q9Y2G2 431 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 CITO14578 2027 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 TRIM64CA6NLI5 447 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 SYCE1LA8MT33 242 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 CLDN25C9JDP6 229 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 ASNA1O43681 348 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 BMP10O95393 424 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 MAGP20916 626 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 FASP25445 335 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 PSMA4P25789 261 aaKnown RBP9.7□□□□□ -0.86
CCDC40-212ENST00000574799 SPRP35270 261 aaPredicted RBP9.7□□□□□ -0.86
CCDC40-212ENST00000574799 PPIL2Q13356 520 aa9.7□□□□□ -0.86
CCDC40-212ENST00000574799 TRIM25Q14258 630 aaKnown RBP9.7□□□□□ -0.86
CCDC40-212ENST00000574799 MAPRE2Q15555 327 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms