RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 ANGPTL2Q9UKU9 493 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 CAPN11Q9UMQ6 739 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.28□□□□□ -1.08
VPS53-214ENST00000572607 ITPR1Q14643 2758 aa8.28□□□□□ -1.08
VPS53-214ENST00000572607 MUC22E2RYF6 1773 aaPredicted RBP8.27□□□□□ -1.08
VPS53-214ENST00000572607 ABCA7Q8IZY2 2146 aa8.27□□□□□ -1.08
VPS53-214ENST00000572607 TBC1D3DA0A087WVF3 549 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 TBC1D3IA0A087WXS9 549 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 TBC1D3EA0A087X179 549 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 TBC1D3KA0A087X1G2 549 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 TCRBV5S1A1TA0A578 114 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 TBC1D3FA6NER0 549 aaPredicted RBP8.27□□□□□ -1.09
VPS53-214ENST00000572607 ZSCAN5CA6NGD5 496 aaPredicted RBP8.27□□□□□ -1.09
VPS53-214ENST00000572607 C1QTNF9BB2RNN3 333 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 EIF3CLB5ME19 914 aaKnown RBP8.27□□□□□ -1.09
VPS53-214ENST00000572607 TBC1D3LB9A6J9 549 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 DDX3XO00571 662 aaKnown RBP eCLIP8.27□□□□□ -1.09
VPS53-214ENST00000572607 MCF2LO15068 1137 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 FGF10O15520 208 aaPredicted RBP8.27□□□□□ -1.09
VPS53-214ENST00000572607 DAPK3O43293 454 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 PRPSAP2O60256 369 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 CER1O95813 267 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 PRNPP04156 253 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 PROS1P07225 676 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 TBC1D3HP0C7X1 549 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 C1QTNF9P0C862 333 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 VAV1P15498 845 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 CD27P26842 260 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 L1CAMP32004 1257 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 HTR7P34969 479 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 PBX1P40424 430 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 SERPINH1P50454 418 aaKnown RBP8.27□□□□□ -1.09
VPS53-214ENST00000572607 NOVA1P51513 510 aaKnown RBP8.27□□□□□ -1.09
VPS53-214ENST00000572607 AFF3P51826 1226 aaKnown RBP8.27□□□□□ -1.09
VPS53-214ENST00000572607 TPI1P60174 286 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 POLD3Q15054 466 aaPredicted RBP8.27□□□□□ -1.09
VPS53-214ENST00000572607 NFKBIBQ15653 356 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 LINC01559Q495D7 138 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 RAB6CQ53S08 254 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 SLC45A4Q5BKX6 768 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 MANEALQ5VSG8 457 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 E4F1Q66K89 784 aaPredicted RBP8.27□□□□□ -1.09
VPS53-214ENST00000572607 TBC1D3GQ6DHY5 549 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 TBC1D3CQ6IPX1 549 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 PLEKHA7Q6IQ23 1121 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 C22orf39Q6P5X5 142 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 NCEH1Q6PIU2 408 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 LINGO4Q6UY18 593 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.27□□□□□ -1.09
VPS53-214ENST00000572607 TBC1D3Q8IZP1 549 aaPredicted RBP8.27□□□□□ -1.09
VPS53-214ENST00000572607 RYBPQ8N488 228 aaPredicted RBP8.27□□□□□ -1.09
VPS53-214ENST00000572607 MINDY1Q8N5J2 469 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 PCDH20Q8N6Y1 951 aaKnown RBP8.27□□□□□ -1.09
VPS53-214ENST00000572607 ZNF511Q8NB15 262 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 PIP4K2CQ8TBX8 421 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 BIRC7Q96CA5 298 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 PSMB7Q99436 277 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 EIF3CQ99613 913 aaKnown RBP8.27□□□□□ -1.09
VPS53-214ENST00000572607 XPO4Q9C0E2 1151 aaKnown RBP8.27□□□□□ -1.09
VPS53-214ENST00000572607 RAB6CQ9H0N0 254 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 MAGEH1Q9H213 219 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 NEUROG2Q9H2A3 272 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 DEF6Q9H4E7 631 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 ADAMTS1Q9UHI8 967 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 FZD10Q9ULW2 581 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 AP4E1Q9UPM8 1137 aa8.27□□□□□ -1.09
VPS53-214ENST00000572607 ASCC3Q8N3C0 2202 aaKnown RBP8.27□□□□□ -1.09
VPS53-214ENST00000572607 CXorf51AA0A1B0GTR3 108 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 FAM181BA6NEQ2 426 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 TMEM191CA6NGB0 347 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 FAM72CH0Y354 149 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 K7ERQ8 282 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 EEF2KO00418 725 aaKnown RBP8.26□□□□□ -1.09
VPS53-214ENST00000572607 KPNA3O00505 521 aaPredicted RBP8.26□□□□□ -1.09
VPS53-214ENST00000572607 CDX4O14627 284 aaPredicted RBP8.26□□□□□ -1.09
VPS53-214ENST00000572607 BUB1O43683 1085 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 KCNK5O95279 499 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 TOP3BO95985 862 aaKnown RBP8.26□□□□□ -1.09
VPS53-214ENST00000572607 MT-CO1P00395 513 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 CSRP1P21291 193 aaKnown RBP8.26□□□□□ -1.09
VPS53-214ENST00000572607 GLDCP23378 1020 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 CASP14P31944 242 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 CHRNA3P32297 505 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 GMPRP36959 345 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 DNA2P51530 1060 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 CCR5P51681 352 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 ZNF135P52742 658 aaPredicted RBP8.26□□□□□ -1.09
VPS53-214ENST00000572607 GALCP54803 685 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 ADPRHP54922 357 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 C21orf59P57076 290 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 ARF5P84085 180 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 GRIK2Q13002 908 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 SLC14A1Q13336 389 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 HNRNPDQ14103 355 aaKnown RBP8.26□□□□□ -1.09
VPS53-214ENST00000572607 POM121L1PQ3SYA9 428 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 CARD16Q5EG05 197 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 FAM72AQ5TYM5 149 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 SPECC1LQ69YQ0 1117 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 FAM72DQ6L9T8 149 aa8.26□□□□□ -1.09
VPS53-214ENST00000572607 PSAPL1Q6NUJ1 521 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms