RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 SEL1L2Q5TEA6 688 aa11□□□□□ -0.65
CLK3-226ENST00000569406 TRABD2AQ86V40 505 aa11□□□□□ -0.65
CLK3-226ENST00000569406 CARNMT1Q8N4J0 409 aa11□□□□□ -0.65
CLK3-226ENST00000569406 MINDY2Q8NBR6 621 aa11□□□□□ -0.65
CLK3-226ENST00000569406 ART4Q93070 314 aa11□□□□□ -0.65
CLK3-226ENST00000569406 CEP19Q96LK0 163 aa11□□□□□ -0.65
CLK3-226ENST00000569406 ZNF347Q96SE7 839 aa11□□□□□ -0.65
CLK3-226ENST00000569406 MTG1Q9BT17 334 aaPredicted RBP11□□□□□ -0.65
CLK3-226ENST00000569406 POLR1BQ9H9Y6 1135 aa11□□□□□ -0.65
CLK3-226ENST00000569406 GPRC5CQ9NQ84 441 aa11□□□□□ -0.65
CLK3-226ENST00000569406 KMT5AQ9NQR1 393 aa11□□□□□ -0.65
CLK3-226ENST00000569406 XPNPEP1Q9NQW7 623 aa11□□□□□ -0.65
CLK3-226ENST00000569406 FZD1Q9UP38 647 aa11□□□□□ -0.65
CLK3-226ENST00000569406 A0A087WXM4 84 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 PI15O43692 258 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 ALDH1A2O94788 518 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 PSMC2P35998 433 aaKnown RBP10.99□□□□□ -0.65
CLK3-226ENST00000569406 PTGIRP43119 386 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 PRKAA2P54646 552 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 RPS6P62753 249 aaKnown RBP10.99□□□□□ -0.65
CLK3-226ENST00000569406 UBAP2LQ14157 1087 aaKnown RBP10.99□□□□□ -0.65
CLK3-226ENST00000569406 TRIM25Q14258 630 aaKnown RBP10.99□□□□□ -0.65
CLK3-226ENST00000569406 SQLEQ14534 574 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 ACAP2Q15057 778 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 CDK10Q15131 360 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 ZFP69Q49AA0 526 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 FAM26DQ5JW98 314 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 ODR4Q5SWX8 454 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 IQSEC1Q6DN90 963 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 PADI6Q6TGC4 694 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 GSTA5Q7RTV2 222 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 PCGF5Q86SE9 256 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 VANGL1Q8TAA9 524 aaPredicted RBP10.99□□□□□ -0.65
CLK3-226ENST00000569406 TXNDC15Q96J42 360 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 KLF6Q99612 283 aaPredicted RBP10.99□□□□□ -0.65
CLK3-226ENST00000569406 RAVER2Q9HCJ3 691 aaKnown RBP10.99□□□□□ -0.65
CLK3-226ENST00000569406 NINJ2Q9NZG7 142 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 NUP50Q9UKX7 468 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 PSMD13Q9UNM6 376 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 A0A0G2JMZ2 1700 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 LRRC37A2A6NM11 1700 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 SNAP91O60641 907 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 RFPL2O75678 378 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 FGF18O76093 207 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 CHRNA3P32297 505 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 AKR1D1P51857 326 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 MLLT10P55197 1068 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 IFITM3Q01628 133 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 C5orf22Q49AR2 442 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 SLX4IPQ5VYV7 408 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 SLC39A4Q6P5W5 647 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.99□□□□□ -0.65
CLK3-226ENST00000569406 ST13P5Q8NFI4 369 aaPredicted RBP10.99□□□□□ -0.65
CLK3-226ENST00000569406 LPGAT1Q92604 370 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 AKAP1Q92667 903 aaKnown RBP eCLIP10.99□□□□□ -0.65
CLK3-226ENST00000569406 ACTL7BQ9Y614 415 aa10.99□□□□□ -0.65
CLK3-226ENST00000569406 TRAV20A0A0B4J274 112 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 ACOX3O15254 700 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 PGRP06401 933 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 MMP8P22894 467 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 EEF1B2P24534 225 aaKnown RBP10.98□□□□□ -0.65
CLK3-226ENST00000569406 GRM5P41594 1212 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 HSPA13P48723 471 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 BFSP1Q12934 665 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 BFSP2Q13515 415 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 KCTD2Q14681 263 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 EPC2Q52LR7 807 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 NSMFQ6X4W1 530 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 ARHGEF19Q8IW93 802 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 FAM178BQ8IXR5 827 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 LHFPL5Q8TAF8 219 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 POMGNT1Q8WZA1 660 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 ARHGEF26Q96DR7 871 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 TEKT3Q9BXF9 490 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 KCNK13Q9HB14 408 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 REV1Q9UBZ9 1251 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 ADAMTS5Q9UNA0 930 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 POLR2AP24928 1970 aaKnown RBP10.98□□□□□ -0.65
CLK3-226ENST00000569406 NCANO14594 1321 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 A0A1W2PPM1 405 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 TRPC5OSA6NMA1 111 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 SULT1B1O43704 296 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 CHRNB2P17787 502 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 GABRB3P28472 473 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 TRIM23P36406 574 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 GTF2BQ00403 316 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 PMS2P3Q13401 168 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 ZNF267Q14586 743 aaPredicted RBP10.98□□□□□ -0.65
CLK3-226ENST00000569406 DRAP1Q14919 205 aaPredicted RBP10.98□□□□□ -0.65
CLK3-226ENST00000569406 ALFQ53S48 1182 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 ZNF677Q86XU0 584 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 ARMC8Q8IUR7 673 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 C12orf56Q8IXR9 622 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 ARL6IP6Q8N6S5 226 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 ZNF366Q8N895 744 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 BSNDQ8WZ55 320 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 KAT5Q92993 513 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 CLSTN3Q9BQT9 956 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 TTYH2Q9BSA4 534 aa10.98□□□□□ -0.65
CLK3-226ENST00000569406 DPEP3Q9H4B8 488 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms