RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 CLEC18AA5D8T8 446 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 LMO7DNF2Z398 122 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 ENDOD1O94919 500 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 TRUB2O95900 331 aaKnown RBP16.53■□□□□ 0.24
CLK3-223ENST00000568488 CALCAP01258 141 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 RPLP0P05388 317 aaKnown RBP16.53■□□□□ 0.24
CLK3-223ENST00000568488 RRM1P23921 792 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 ME1P48163 572 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 NEK3P51956 506 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 THOP1P52888 689 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 CNGA2Q16280 664 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 FOXD4L6Q3SYB3 417 aaPredicted RBP16.53■□□□□ 0.24
CLK3-223ENST00000568488 CBWD6Q4V339 395 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 CBWD3Q5JTY5 395 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 CBWD5Q5RIA9 395 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 FBXL22Q6P050 247 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 CLEC18BQ6UXF7 455 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 FOXD4L3Q6VB84 417 aaPredicted RBP16.53■□□□□ 0.24
CLK3-223ENST00000568488 PHACTR4Q8IZ21 702 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 CLEC18CQ8NCF0 446 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 JPH3Q8WXH2 748 aaPredicted RBP16.53■□□□□ 0.24
CLK3-223ENST00000568488 USP7Q93009 1102 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 CCDC74AQ96AQ1 378 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 PRMT1Q99873 361 aaKnown RBP16.53■□□□□ 0.24
CLK3-223ENST00000568488 LRRC61Q9BV99 259 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 TNKS2Q9H2K2 1166 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 ADNPQ9H2P0 1102 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 COX16Q9P0S2 106 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 IL36AQ9UHA7 158 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 RABGEF1Q9UJ41 708 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 PCDHB4Q9Y5E5 795 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 OR51B4Q9Y5P0 310 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 TRPM6Q9BX84 2022 aa16.53■□□□□ 0.24
CLK3-223ENST00000568488 USP9YO00507 2555 aaPredicted RBP16.52■□□□□ 0.24
CLK3-223ENST00000568488 ZFC3H1O60293 1989 aaKnown RBP16.52■□□□□ 0.24
CLK3-223ENST00000568488 IGLON5A6NGN9 336 aa16.52■□□□□ 0.24
CLK3-223ENST00000568488 D6RAR5 112 aa16.52■□□□□ 0.24
CLK3-223ENST00000568488 SART1O43290 800 aaKnown RBP16.52■□□□□ 0.24
CLK3-223ENST00000568488 SMAD6O43541 496 aaKnown RBP16.52■□□□□ 0.24
CLK3-223ENST00000568488 SNAP91O60641 907 aa16.52■□□□□ 0.24
CLK3-223ENST00000568488 LEFTY1O75610 366 aa16.52■□□□□ 0.24
CLK3-223ENST00000568488 PAEPP09466 180 aa16.52■□□□□ 0.24
CLK3-223ENST00000568488 TSHRP16473 764 aa16.52■□□□□ 0.24
CLK3-223ENST00000568488 BRD2P25440 801 aaKnown RBP16.52■□□□□ 0.24
CLK3-223ENST00000568488 RECQLP46063 649 aaPredicted RBP16.52■□□□□ 0.24
CLK3-223ENST00000568488 IRAK1P51617 712 aa16.52■□□□□ 0.24
CLK3-223ENST00000568488 KRT83P78385 493 aa16.52■□□□□ 0.24
CLK3-223ENST00000568488 KCNAB2Q13303 367 aa16.52■□□□□ 0.24
CLK3-223ENST00000568488 PTK2BQ14289 1009 aa16.52■□□□□ 0.24
CLK3-223ENST00000568488 TCEA2Q15560 299 aa16.52■□□□□ 0.24
CLK3-223ENST00000568488 DCAF17Q5H9S7 520 aaPredicted RBP16.52■□□□□ 0.24
CLK3-223ENST00000568488 RESP18Q5W5W9 173 aa16.52■□□□□ 0.24
CLK3-223ENST00000568488 BORAQ6PGQ7 559 aa16.52■□□□□ 0.24
CLK3-223ENST00000568488 ZSWIM1Q9BR11 485 aa16.52■□□□□ 0.24
CLK3-223ENST00000568488 SRRTQ9BXP5 876 aaKnown RBP16.52■□□□□ 0.24
CLK3-223ENST00000568488 CLPBQ9H078 707 aa16.52■□□□□ 0.24
CLK3-223ENST00000568488 VANGL2Q9ULK5 521 aa16.52■□□□□ 0.24
CLK3-223ENST00000568488 PCDHA7Q9UN72 937 aa16.52■□□□□ 0.24
CLK3-223ENST00000568488 HS3ST2Q9Y278 367 aa16.52■□□□□ 0.24
CLK3-223ENST00000568488 FADS3Q9Y5Q0 445 aa16.52■□□□□ 0.24
CLK3-223ENST00000568488 A0A1W2PQM1 296 aa16.51■□□□□ 0.23
CLK3-223ENST00000568488 ENO4A6NNW6 628 aa16.51■□□□□ 0.23
CLK3-223ENST00000568488 ACTN4O43707 911 aaKnown RBP16.51■□□□□ 0.23
CLK3-223ENST00000568488 PRR29P0C7W0 189 aa16.51■□□□□ 0.23
CLK3-223ENST00000568488 EPB41P11171 864 aaKnown RBP16.51■□□□□ 0.23
CLK3-223ENST00000568488 ADRB3P13945 408 aa16.51■□□□□ 0.23
CLK3-223ENST00000568488 CCKBRP32239 447 aa16.51■□□□□ 0.23
CLK3-223ENST00000568488 ETV5P41161 510 aa16.51■□□□□ 0.23
CLK3-223ENST00000568488 CASRP41180 1078 aa16.51■□□□□ 0.23
CLK3-223ENST00000568488 PFN3P60673 137 aa16.51■□□□□ 0.23
CLK3-223ENST00000568488 PITX1P78337 314 aaPredicted RBP16.51■□□□□ 0.23
CLK3-223ENST00000568488 C1QBPQ07021 282 aaKnown RBP16.51■□□□□ 0.23
CLK3-223ENST00000568488 STILQ15468 1287 aa16.51■□□□□ 0.23
CLK3-223ENST00000568488 FOXD4L5Q5VV16 416 aaPredicted RBP16.51■□□□□ 0.23
CLK3-223ENST00000568488 SCG3Q8WXD2 468 aaKnown RBP16.51■□□□□ 0.23
CLK3-223ENST00000568488 FOXD4L4Q8WXT5 416 aaPredicted RBP16.51■□□□□ 0.23
CLK3-223ENST00000568488 CCDC47Q96A33 483 aaKnown RBP16.51■□□□□ 0.23
CLK3-223ENST00000568488 LENG8Q96PV6 779 aaPredicted RBP16.51■□□□□ 0.23
CLK3-223ENST00000568488 KLF6Q99612 283 aaPredicted RBP16.51■□□□□ 0.23
CLK3-223ENST00000568488 TRIM62Q9BVG3 475 aa16.51■□□□□ 0.23
CLK3-223ENST00000568488 LRRN3Q9H3W5 708 aa16.51■□□□□ 0.23
CLK3-223ENST00000568488 FAM204AQ9H8W3 233 aa16.51■□□□□ 0.23
CLK3-223ENST00000568488 FOXJ2Q9P0K8 574 aa16.51■□□□□ 0.23
CLK3-223ENST00000568488 M0QYT0 321 aa16.5■□□□□ 0.23
CLK3-223ENST00000568488 RNF225M0QZC1 329 aaPredicted RBP16.5■□□□□ 0.23
CLK3-223ENST00000568488 NEMP1O14524 444 aa16.5■□□□□ 0.23
CLK3-223ENST00000568488 CELA2BP08218 269 aaPredicted RBP16.5■□□□□ 0.23
CLK3-223ENST00000568488 TBXAS1P24557 533 aaPredicted RBP16.5■□□□□ 0.23
CLK3-223ENST00000568488 GGCXP38435 758 aa16.5■□□□□ 0.23
CLK3-223ENST00000568488 POLE2P56282 527 aa16.5■□□□□ 0.23
CLK3-223ENST00000568488 AUHQ13825 339 aaKnown RBP16.5■□□□□ 0.23
CLK3-223ENST00000568488 LINGO4Q6UY18 593 aa16.5■□□□□ 0.23
CLK3-223ENST00000568488 DPY19L3Q6ZPD9 716 aa16.5■□□□□ 0.23
CLK3-223ENST00000568488 UBR7Q8N806 425 aa16.5■□□□□ 0.23
CLK3-223ENST00000568488 ARL10Q8N8L6 244 aa16.5■□□□□ 0.23
CLK3-223ENST00000568488 Q8N9G6 341 aaPredicted RBP16.5■□□□□ 0.23
CLK3-223ENST00000568488 KYQ8NBH2 561 aa16.5■□□□□ 0.23
CLK3-223ENST00000568488 C2orf49Q9BVC5 232 aaPredicted RBP16.5■□□□□ 0.23
CLK3-223ENST00000568488 UPF2Q9HAU5 1272 aaKnown RBP16.5■□□□□ 0.23
CLK3-223ENST00000568488 POPDC2Q9HBU9 364 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms