RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 HPCAL4Q9UM19 191 aa19.09■□□□□ 0.65
CLN3-218ENST00000565688 ZFR2Q9UPR6 939 aaKnown RBP19.09■□□□□ 0.65
CLN3-218ENST00000565688 URB1O60287 2271 aaKnown RBP19.08■□□□□ 0.65
CLN3-218ENST00000565688 A0A087WV48 116 aa19.08■□□□□ 0.64
CLN3-218ENST00000565688 A6NNZ2 444 aa19.08■□□□□ 0.64
CLN3-218ENST00000565688 ADRB3P13945 408 aa19.08■□□□□ 0.64
CLN3-218ENST00000565688 RHOQP17081 205 aa19.08■□□□□ 0.64
CLN3-218ENST00000565688 CHRNB2P17787 502 aa19.08■□□□□ 0.64
CLN3-218ENST00000565688 DGKAP23743 735 aa19.08■□□□□ 0.64
CLN3-218ENST00000565688 STAT1P42224 750 aa19.08■□□□□ 0.64
CLN3-218ENST00000565688 PTPN9P43378 593 aa19.08■□□□□ 0.64
CLN3-218ENST00000565688 CCNHP51946 323 aaPredicted RBP19.08■□□□□ 0.64
CLN3-218ENST00000565688 CCDC14Q49A88 953 aa19.08■□□□□ 0.64
CLN3-218ENST00000565688 MANEALQ5VSG8 457 aa19.08■□□□□ 0.64
CLN3-218ENST00000565688 SEL1L3Q68CR1 1132 aa19.08■□□□□ 0.64
CLN3-218ENST00000565688 RWDD4Q6NW29 188 aaKnown RBP19.08■□□□□ 0.64
CLN3-218ENST00000565688 CLEC17AQ6ZS10 378 aa19.08■□□□□ 0.64
CLN3-218ENST00000565688 ABI3BPQ7Z7G0 1075 aa19.08■□□□□ 0.64
CLN3-218ENST00000565688 CACTIN-AS1Q8N1I8 211 aa19.08■□□□□ 0.64
CLN3-218ENST00000565688 SLC25A45Q8N413 288 aa19.08■□□□□ 0.64
CLN3-218ENST00000565688 OR13H1Q8NG92 308 aa19.08■□□□□ 0.64
CLN3-218ENST00000565688 CALN1Q9BXU9 219 aa19.08■□□□□ 0.64
CLN3-218ENST00000565688 SLC17A9Q9BYT1 436 aa19.08■□□□□ 0.64
CLN3-218ENST00000565688 FZD3Q9NPG1 666 aa19.08■□□□□ 0.64
CLN3-218ENST00000565688 HS3ST3A1Q9Y663 406 aa19.08■□□□□ 0.64
CLN3-218ENST00000565688 ARID1BQ8NFD5 2236 aaPredicted RBP19.08■□□□□ 0.64
CLN3-218ENST00000565688 DOCK9Q9BZ29 2069 aa19.07■□□□□ 0.64
CLN3-218ENST00000565688 C2CD4BA6NLJ0 364 aa19.07■□□□□ 0.64
CLN3-218ENST00000565688 RNF103O00237 685 aa19.07■□□□□ 0.64
CLN3-218ENST00000565688 SIGLEC6O43699 453 aa19.07■□□□□ 0.64
CLN3-218ENST00000565688 AP1G1O43747 822 aa19.07■□□□□ 0.64
CLN3-218ENST00000565688 NSFP46459 744 aaKnown RBP19.07■□□□□ 0.64
CLN3-218ENST00000565688 E2F1Q01094 437 aa19.07■□□□□ 0.64
CLN3-218ENST00000565688 TARDBPQ13148 414 aaKnown RBP eCLIP19.07■□□□□ 0.64
CLN3-218ENST00000565688 C15orf59Q2T9L4 293 aaPredicted RBP19.07■□□□□ 0.64
CLN3-218ENST00000565688 GCNT7Q6ZNI0 430 aa19.07■□□□□ 0.64
CLN3-218ENST00000565688 NLRP14Q86W24 1093 aa19.07■□□□□ 0.64
CLN3-218ENST00000565688 ANKRD20A12PQ8NF67 263 aa19.07■□□□□ 0.64
CLN3-218ENST00000565688 OR4C6Q8NH72 309 aa19.07■□□□□ 0.64
CLN3-218ENST00000565688 SLC30A5Q8TAD4 765 aa19.07■□□□□ 0.64
CLN3-218ENST00000565688 RFFLQ8WZ73 363 aa19.07■□□□□ 0.64
CLN3-218ENST00000565688 CENPIQ92674 756 aaPredicted RBP19.07■□□□□ 0.64
CLN3-218ENST00000565688 LRIG1Q96JA1 1093 aa19.07■□□□□ 0.64
CLN3-218ENST00000565688 C11orf70Q9BRQ4 267 aa19.07■□□□□ 0.64
CLN3-218ENST00000565688 NRSN2Q9GZP1 204 aa19.07■□□□□ 0.64
CLN3-218ENST00000565688 MAGEH1Q9H213 219 aa19.07■□□□□ 0.64
CLN3-218ENST00000565688 ZDHHC6Q9H6R6 413 aa19.07■□□□□ 0.64
CLN3-218ENST00000565688 NLRC4Q9NPP4 1024 aa19.07■□□□□ 0.64
CLN3-218ENST00000565688 TMEM248Q9NWD8 314 aa19.07■□□□□ 0.64
CLN3-218ENST00000565688 HECAQ9UBI9 543 aaPredicted RBP19.07■□□□□ 0.64
CLN3-218ENST00000565688 FCF1Q9Y324 198 aaKnown RBP19.07■□□□□ 0.64
CLN3-218ENST00000565688 TRIM38O00635 465 aa19.06■□□□□ 0.64
CLN3-218ENST00000565688 PLEKP08567 350 aaPredicted RBP19.06■□□□□ 0.64
CLN3-218ENST00000565688 ALPPL2P10696 532 aa19.06■□□□□ 0.64
CLN3-218ENST00000565688 KRT3P12035 628 aa19.06■□□□□ 0.64
CLN3-218ENST00000565688 UNGP13051 313 aaPredicted RBP19.06■□□□□ 0.64
CLN3-218ENST00000565688 HOXB3P14651 431 aaPredicted RBP19.06■□□□□ 0.64
CLN3-218ENST00000565688 ACVRL1P37023 503 aa19.06■□□□□ 0.64
CLN3-218ENST00000565688 KLK7P49862 253 aa19.06■□□□□ 0.64
CLN3-218ENST00000565688 GSCP56915 257 aaPredicted RBP19.06■□□□□ 0.64
CLN3-218ENST00000565688 CLDN2P57739 230 aa19.06■□□□□ 0.64
CLN3-218ENST00000565688 MAPK8IP2Q13387 824 aaPredicted RBP19.06■□□□□ 0.64
CLN3-218ENST00000565688 POLD3Q15054 466 aaPredicted RBP19.06■□□□□ 0.64
CLN3-218ENST00000565688 Q6ZSR6 202 aa19.06■□□□□ 0.64
CLN3-218ENST00000565688 GPT2Q8TD30 523 aa19.06■□□□□ 0.64
CLN3-218ENST00000565688 ARHGEF2Q92974 986 aaKnown RBP19.06■□□□□ 0.64
CLN3-218ENST00000565688 RAB7BQ96AH8 199 aa19.06■□□□□ 0.64
CLN3-218ENST00000565688 TBC1D31Q96DN5 1066 aa19.06■□□□□ 0.64
CLN3-218ENST00000565688 LMBRD1Q9NUN5 540 aa19.06■□□□□ 0.64
CLN3-218ENST00000565688 FADS3Q9Y5Q0 445 aa19.06■□□□□ 0.64
CLN3-218ENST00000565688 BAHCC1Q9P281 2608 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 NEMP2A6NFY4 417 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 TSPAN6O43657 245 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 RAMP2O60895 175 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 PIAS2O75928 621 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 LRIG2O94898 1065 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 CD160O95971 181 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 CALB1P05937 261 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 CLDN6P56747 220 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 DAB2P98082 770 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 RTP5Q14D33 572 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 RAB6CQ53S08 254 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 KYAT3Q6YP21 454 aaKnown RBP19.05■□□□□ 0.64
CLN3-218ENST00000565688 PARS2Q7L3T8 475 aaKnown RBP19.05■□□□□ 0.64
CLN3-218ENST00000565688 PTAR1Q7Z6K3 402 aaPredicted RBP19.05■□□□□ 0.64
CLN3-218ENST00000565688 PHLDB2Q86SQ0 1253 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 SLC22A18ASQ8N1D0 253 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 RYBPQ8N488 228 aaPredicted RBP19.05■□□□□ 0.64
CLN3-218ENST00000565688 JOSD2Q8TAC2 188 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 FAM172AQ8WUF8 416 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 NTAN1Q96AB6 310 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 TM6SF2Q9BZW4 377 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 RAB6CQ9H0N0 254 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 NDFIP2Q9NV92 336 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 FANCLQ9NW38 375 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 UCKL1Q9NWZ5 548 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 ADAM22Q9P0K1 906 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 DNAI1Q9UI46 699 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 CLCA2Q9UQC9 943 aa19.05■□□□□ 0.64
CLN3-218ENST00000565688 SIK3Q9Y2K2 1263 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms