RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 OPHN1O60890 802 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 GJB3O75712 270 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 STK10O94804 968 aaKnown RBP16.85■□□□□ 0.29
VPS4A-202ENST00000562754 GAS8O95995 478 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 KRT14P02533 472 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 HLA-EP13747 358 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 HNRNPLP14866 589 aaKnown RBP eCLIP16.85■□□□□ 0.29
VPS4A-202ENST00000562754 NFKB1P19838 968 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 PRKCHP24723 683 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 RPL22P35268 128 aaKnown RBP16.85■□□□□ 0.29
VPS4A-202ENST00000562754 IL12RB1P42701 662 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 RHOAP61586 193 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 ENPP2Q13822 863 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 PTK6Q13882 451 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 DHX34Q14147 1143 aaKnown RBP16.85■□□□□ 0.29
VPS4A-202ENST00000562754 P3H1Q32P28 736 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 ATXN7L2Q5T6C5 722 aaPredicted RBP16.85■□□□□ 0.29
VPS4A-202ENST00000562754 ALG1LQ6GMV1 187 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 Q6ZVU0 165 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 ZNF513Q8N8E2 541 aaPredicted RBP16.85■□□□□ 0.29
VPS4A-202ENST00000562754 CCDC89Q8N998 374 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 KDM1BQ8NB78 822 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 FERMT1Q9BQL6 677 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 GORASP1Q9BQQ3 440 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 TM6SF2Q9BZW4 377 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 FOXQ1Q9C009 403 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 CEP44Q9C0F1 390 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 TNKS2Q9H2K2 1166 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 TMEM245Q9H330 911 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 LTB4R2Q9NPC1 389 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 CACNA2D2Q9NY47 1150 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 TRHDEQ9UKU6 1024 aa16.85■□□□□ 0.29
VPS4A-202ENST00000562754 MTF2Q9Y483 593 aaPredicted RBP16.85■□□□□ 0.29
VPS4A-202ENST00000562754 TTC24A2A3L6 582 aaPredicted RBP16.84■□□□□ 0.29
VPS4A-202ENST00000562754 WASH3PC4AMC7 463 aa16.84■□□□□ 0.29
VPS4A-202ENST00000562754 RIOK3O14730 519 aaKnown RBP16.84■□□□□ 0.29
VPS4A-202ENST00000562754 CR2P20023 1033 aa16.84■□□□□ 0.29
VPS4A-202ENST00000562754 TIE1P35590 1138 aa16.84■□□□□ 0.29
VPS4A-202ENST00000562754 HSPA9P38646 679 aaKnown RBP16.84■□□□□ 0.29
VPS4A-202ENST00000562754 VPS41P49754 854 aa16.84■□□□□ 0.29
VPS4A-202ENST00000562754 ST8SIA6P61647 398 aa16.84■□□□□ 0.29
VPS4A-202ENST00000562754 DSC2Q02487 901 aa16.84■□□□□ 0.29
VPS4A-202ENST00000562754 NIPAL4Q0D2K0 466 aa16.84■□□□□ 0.29
VPS4A-202ENST00000562754 IHHQ14623 411 aa16.84■□□□□ 0.29
VPS4A-202ENST00000562754 PID1Q7Z2X4 250 aa16.84■□□□□ 0.29
VPS4A-202ENST00000562754 METTL3Q86U44 580 aaKnown RBP16.84■□□□□ 0.29
VPS4A-202ENST00000562754 BBS5Q8N3I7 341 aa16.84■□□□□ 0.29
VPS4A-202ENST00000562754 TAB3Q8N5C8 712 aaPredicted RBP16.84■□□□□ 0.29
VPS4A-202ENST00000562754 PCDH20Q8N6Y1 951 aaKnown RBP16.84■□□□□ 0.29
VPS4A-202ENST00000562754 ISG20Q96AZ6 181 aaKnown RBP16.84■□□□□ 0.29
VPS4A-202ENST00000562754 SHDQ96IW2 340 aa16.84■□□□□ 0.29
VPS4A-202ENST00000562754 NSMCE3Q96MG7 304 aa16.84■□□□□ 0.29
VPS4A-202ENST00000562754 GBA3Q9H227 469 aa16.84■□□□□ 0.29
VPS4A-202ENST00000562754 TBC1D17Q9HA65 648 aa16.84■□□□□ 0.29
VPS4A-202ENST00000562754 GLOD4Q9HC38 313 aa16.84■□□□□ 0.29
VPS4A-202ENST00000562754 FEZ2Q9UHY8 353 aaPredicted RBP16.84■□□□□ 0.29
VPS4A-202ENST00000562754 PLA2G4CQ9UP65 541 aa16.84■□□□□ 0.29
VPS4A-202ENST00000562754 TTLL3Q9Y4R7 772 aa16.84■□□□□ 0.29
VPS4A-202ENST00000562754 STON1Q9Y6Q2 735 aa16.84■□□□□ 0.29
VPS4A-202ENST00000562754 ANKRD36A6QL64 1941 aa16.84■□□□□ 0.29
VPS4A-202ENST00000562754 KANSL1LA0AUZ9 987 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 FAM187AA6NFU0 413 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 RNF40O75150 1001 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 NEBLO76041 1014 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 SLU7O95391 586 aaKnown RBP16.83■□□□□ 0.28
VPS4A-202ENST00000562754 METTL18O95568 372 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 GSRP00390 522 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 CHRNB1P11230 501 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 PSMB4P28070 264 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 NNMTP40261 264 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 WASP42768 502 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 UBXN2BQ14CS0 331 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 PPP1R7Q15435 360 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 HNRNPA1L2Q32P51 320 aaKnown RBP16.83■□□□□ 0.28
VPS4A-202ENST00000562754 ACCSLQ4AC99 568 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 FBXO43Q4G163 708 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 C2orf27AQ580R0 203 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 FAXCQ5TGI0 409 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 C8orf74Q6P047 294 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 SERPINA13PQ6UXR4 307 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 Q6ZS52 159 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 ARHGEF18Q6ZSZ5 1173 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 SYDE1Q6ZW31 735 aaPredicted RBP16.83■□□□□ 0.28
VPS4A-202ENST00000562754 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.83■□□□□ 0.28
VPS4A-202ENST00000562754 IL17RCQ8NAC3 791 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 CCDC26Q8TAB7 109 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 ARRDC2Q8TBH0 407 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 VOPP1Q96AW1 172 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 LRRC1Q9BTT6 524 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 POLR1EQ9GZS1 481 aaKnown RBP16.83■□□□□ 0.28
VPS4A-202ENST00000562754 PAK5Q9P286 719 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 RSPH14Q9UHP6 348 aa16.83■□□□□ 0.28
VPS4A-202ENST00000562754 TECTAO75443 2155 aa16.82■□□□□ 0.28
VPS4A-202ENST00000562754 INSIG1O15503 277 aa16.82■□□□□ 0.28
VPS4A-202ENST00000562754 ADAM23O75077 832 aa16.82■□□□□ 0.28
VPS4A-202ENST00000562754 KLF8O95600 359 aaPredicted RBP16.82■□□□□ 0.28
VPS4A-202ENST00000562754 IGSF6O95976 241 aa16.82■□□□□ 0.28
VPS4A-202ENST00000562754 MMP2P08253 660 aa16.82■□□□□ 0.28
VPS4A-202ENST00000562754 MRPS21P82921 87 aaKnown RBP16.82■□□□□ 0.28
VPS4A-202ENST00000562754 FZD5Q13467 585 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms