RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 PAXBP1Q9Y5B6 917 aa19.4■□□□□ 0.7
VPS35-202ENST00000561713 SLC31A1O15431 190 aa19.39■□□□□ 0.69
VPS35-202ENST00000561713 RNGTTO60942 597 aaKnown RBP19.39■□□□□ 0.69
VPS35-202ENST00000561713 ACTN2P35609 894 aa19.39■□□□□ 0.69
VPS35-202ENST00000561713 SOX5P35711 763 aa19.39■□□□□ 0.69
VPS35-202ENST00000561713 ANP32AP39687 249 aaKnown RBP19.39■□□□□ 0.69
VPS35-202ENST00000561713 TBC1D25Q3MII6 688 aa19.39■□□□□ 0.69
VPS35-202ENST00000561713 SMYD5Q6GMV2 418 aa19.39■□□□□ 0.69
VPS35-202ENST00000561713 PCSK4Q6UW60 755 aa19.39■□□□□ 0.69
VPS35-202ENST00000561713 ZNF605Q86T29 641 aa19.39■□□□□ 0.69
VPS35-202ENST00000561713 TRIM69Q86WT6 500 aa19.39■□□□□ 0.69
VPS35-202ENST00000561713 SPACA3Q8IXA5 215 aa19.39■□□□□ 0.69
VPS35-202ENST00000561713 RXFP2Q8WXD0 754 aa19.39■□□□□ 0.69
VPS35-202ENST00000561713 ZYG11BQ9C0D3 744 aa19.39■□□□□ 0.69
VPS35-202ENST00000561713 ATP13A1Q9HD20 1204 aa19.39■□□□□ 0.69
VPS35-202ENST00000561713 NDFIP2Q9NV92 336 aa19.39■□□□□ 0.69
VPS35-202ENST00000561713 FANCLQ9NW38 375 aa19.39■□□□□ 0.69
VPS35-202ENST00000561713 DMTF1Q9Y222 760 aa19.39■□□□□ 0.69
VPS35-202ENST00000561713 SIK3Q9Y2K2 1263 aa19.39■□□□□ 0.69
VPS35-202ENST00000561713 FCF1Q9Y324 198 aaKnown RBP19.39■□□□□ 0.69
VPS35-202ENST00000561713 TEX51A0A1B0GUA7 166 aa19.38■□□□□ 0.69
VPS35-202ENST00000561713 A0A1W2PQU0 124 aa19.38■□□□□ 0.69
VPS35-202ENST00000561713 MAGEC1O60732 1142 aa19.38■□□□□ 0.69
VPS35-202ENST00000561713 MT-CO3P00414 261 aa19.38■□□□□ 0.69
VPS35-202ENST00000561713 CYP1A1P04798 512 aaPredicted RBP19.38■□□□□ 0.69
VPS35-202ENST00000561713 ACVRL1P37023 503 aa19.38■□□□□ 0.69
VPS35-202ENST00000561713 SERPINH1P50454 418 aaKnown RBP19.38■□□□□ 0.69
VPS35-202ENST00000561713 COPB1P53618 953 aaKnown RBP19.38■□□□□ 0.69
VPS35-202ENST00000561713 CXADRP78310 365 aa19.38■□□□□ 0.69
VPS35-202ENST00000561713 ARF5P84085 180 aa19.38■□□□□ 0.69
VPS35-202ENST00000561713 OVGP1Q12889 678 aa19.38■□□□□ 0.69
VPS35-202ENST00000561713 ZNF211Q13398 564 aaPredicted RBP19.38■□□□□ 0.69
VPS35-202ENST00000561713 SYCP1Q15431 976 aa19.38■□□□□ 0.69
VPS35-202ENST00000561713 LRRK1Q38SD2 2015 aa19.38■□□□□ 0.69
VPS35-202ENST00000561713 SETMARQ53H47 684 aaPredicted RBP19.38■□□□□ 0.69
VPS35-202ENST00000561713 FKBP15Q5T1M5 1219 aa19.38■□□□□ 0.69
VPS35-202ENST00000561713 DPY19L3Q6ZPD9 716 aa19.38■□□□□ 0.69
VPS35-202ENST00000561713 CCDC114Q96M63 670 aa19.38■□□□□ 0.69
VPS35-202ENST00000561713 PCDHB18PQ96TA0 734 aa19.38■□□□□ 0.69
VPS35-202ENST00000561713 PCDHB1Q9Y5F3 818 aa19.38■□□□□ 0.69
VPS35-202ENST00000561713 WASF2Q9Y6W5 498 aa19.38■□□□□ 0.69
VPS35-202ENST00000561713 ANKRD36A6QL64 1941 aa19.37■□□□□ 0.69
VPS35-202ENST00000561713 ZNF821O75541 412 aaPredicted RBP19.37■□□□□ 0.69
VPS35-202ENST00000561713 ZMPSTE24O75844 475 aa19.37■□□□□ 0.69
VPS35-202ENST00000561713 MMP8P22894 467 aa19.37■□□□□ 0.69
VPS35-202ENST00000561713 NUDT1P36639 197 aa19.37■□□□□ 0.69
VPS35-202ENST00000561713 DNA2P51530 1060 aa19.37■□□□□ 0.69
VPS35-202ENST00000561713 E2F1Q01094 437 aa19.37■□□□□ 0.69
VPS35-202ENST00000561713 GNA12Q03113 381 aa19.37■□□□□ 0.69
VPS35-202ENST00000561713 CCDC14Q49A88 953 aa19.37■□□□□ 0.69
VPS35-202ENST00000561713 ARSIQ5FYB1 569 aa19.37■□□□□ 0.69
VPS35-202ENST00000561713 SEL1L3Q68CR1 1132 aa19.37■□□□□ 0.69
VPS35-202ENST00000561713 LEKR1Q6ZMV7 388 aa19.37■□□□□ 0.69
VPS35-202ENST00000561713 RBM43Q6ZSC3 357 aaKnown RBP19.37■□□□□ 0.69
VPS35-202ENST00000561713 CCDC185Q8N715 623 aa19.37■□□□□ 0.69
VPS35-202ENST00000561713 OR6K2Q8NGY2 324 aa19.37■□□□□ 0.69
VPS35-202ENST00000561713 NAF1Q96HR8 494 aaKnown RBP19.37■□□□□ 0.69
VPS35-202ENST00000561713 C1orf74Q96LT6 269 aa19.37■□□□□ 0.69
VPS35-202ENST00000561713 PCMTD1Q96MG8 357 aaPredicted RBP19.37■□□□□ 0.69
VPS35-202ENST00000561713 HAPLN3Q96S86 360 aa19.37■□□□□ 0.69
VPS35-202ENST00000561713 TM6SF2Q9BZW4 377 aa19.37■□□□□ 0.69
VPS35-202ENST00000561713 PREBQ9HCU5 417 aa19.37■□□□□ 0.69
VPS35-202ENST00000561713 DYRK4Q9NR20 520 aa19.37■□□□□ 0.69
VPS35-202ENST00000561713 UCKL1Q9NWZ5 548 aa19.37■□□□□ 0.69
VPS35-202ENST00000561713 IL36AQ9UHA7 158 aa19.37■□□□□ 0.69
VPS35-202ENST00000561713 NEU3Q9UQ49 428 aa19.37■□□□□ 0.69
VPS35-202ENST00000561713 FAM72CH0Y354 149 aa19.36■□□□□ 0.69
VPS35-202ENST00000561713 PRAMEF26H0Y7S4 382 aa19.36■□□□□ 0.69
VPS35-202ENST00000561713 LEFTY1O75610 366 aa19.36■□□□□ 0.69
VPS35-202ENST00000561713 DGKAP23743 735 aa19.36■□□□□ 0.69
VPS35-202ENST00000561713 SDC4P31431 198 aa19.36■□□□□ 0.69
VPS35-202ENST00000561713 CLCN6P51797 869 aa19.36■□□□□ 0.69
VPS35-202ENST00000561713 DAB2P98082 770 aa19.36■□□□□ 0.69
VPS35-202ENST00000561713 FAM72AQ5TYM5 149 aa19.36■□□□□ 0.69
VPS35-202ENST00000561713 MANEALQ5VSG8 457 aa19.36■□□□□ 0.69
VPS35-202ENST00000561713 FAM72DQ6L9T8 149 aa19.36■□□□□ 0.69
VPS35-202ENST00000561713 RWDD4Q6NW29 188 aaKnown RBP19.36■□□□□ 0.69
VPS35-202ENST00000561713 CLEC17AQ6ZS10 378 aa19.36■□□□□ 0.69
VPS35-202ENST00000561713 FAM72BQ86X60 149 aa19.36■□□□□ 0.69
VPS35-202ENST00000561713 ZNF677Q86XU0 584 aa19.36■□□□□ 0.69
VPS35-202ENST00000561713 KLHDC7BQ96G42 594 aa19.36■□□□□ 0.69
VPS35-202ENST00000561713 SEPT11Q9NVA2 429 aaKnown RBP19.36■□□□□ 0.69
VPS35-202ENST00000561713 DNAI1Q9UI46 699 aa19.36■□□□□ 0.69
VPS35-202ENST00000561713 ZFR2Q9UPR6 939 aaKnown RBP19.36■□□□□ 0.69
VPS35-202ENST00000561713 FARP1Q9Y4F1 1045 aaPredicted RBP19.36■□□□□ 0.69
VPS35-202ENST00000561713 ILVBLA1L0T0 632 aa19.35■□□□□ 0.69
VPS35-202ENST00000561713 C2CD4BA6NLJ0 364 aa19.35■□□□□ 0.69
VPS35-202ENST00000561713 FFAR2O15552 330 aa19.35■□□□□ 0.69
VPS35-202ENST00000561713 PCDH8O95206 1070 aa19.35■□□□□ 0.69
VPS35-202ENST00000561713 PRNPP04156 253 aa19.35■□□□□ 0.69
VPS35-202ENST00000561713 TPM2P07951 284 aa19.35■□□□□ 0.69
VPS35-202ENST00000561713 THEGLP0DJG4 465 aa19.35■□□□□ 0.69
VPS35-202ENST00000561713 GKP32189 559 aa19.35■□□□□ 0.69
VPS35-202ENST00000561713 RECQLP46063 649 aaPredicted RBP19.35■□□□□ 0.69
VPS35-202ENST00000561713 CCNHP51946 323 aaPredicted RBP19.35■□□□□ 0.69
VPS35-202ENST00000561713 CLDN2P57739 230 aa19.35■□□□□ 0.69
VPS35-202ENST00000561713 PTP4A2Q12974 167 aa19.35■□□□□ 0.69
VPS35-202ENST00000561713 ZNF284Q2VY69 593 aa19.35■□□□□ 0.69
VPS35-202ENST00000561713 CT47A1Q5JQC4 288 aaPredicted RBP19.35■□□□□ 0.69
VPS35-202ENST00000561713 TMC6Q7Z403 805 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms