RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 CATSPER3Q86XQ3 398 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 COL23A1Q86Y22 540 aaPredicted RBP2.61□□□□□ -1.99
SPG11-223ENST00000560858 NELFCDQ8IXH7 590 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 KLHL7Q8IXQ5 586 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 C12orf56Q8IXR9 622 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 CACNA2D3Q8IZS8 1091 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 KRT78Q8N1N4 520 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 SYNPOQ8N3V7 929 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 CERS5Q8N5B7 392 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 OTUD6BQ8N6M0 293 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 NANOGP1Q8N7R0 232 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 B3GALNT2Q8NCR0 500 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 GMCL1P1Q8NEA9 526 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 OR2W6PQ8NHA6 318 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 CCDC26Q8TAB7 109 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 ERMNQ8TAM6 284 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 TBC1D16Q8TBP0 767 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 TBC1D15Q8TC07 691 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 NEK9Q8TD19 979 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 LMBR1Q8WVP7 490 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 CCT6BQ92526 530 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 RAPGEF5Q92565 580 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 SLCO2A1Q92959 643 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 CD101Q93033 1021 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 ZKSCAN4Q969J2 545 aaPredicted RBP2.61□□□□□ -1.99
SPG11-223ENST00000560858 MKL1Q969V6 931 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 PGM2Q96G03 612 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 LYZL4Q96KX0 146 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 FAM20AQ96MK3 541 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 RUNDC3BQ96NL0 473 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 GPR101Q96P66 508 aaPredicted RBP2.61□□□□□ -1.99
SPG11-223ENST00000560858 ZNF317Q96PQ6 595 aaPredicted RBP2.61□□□□□ -1.99
SPG11-223ENST00000560858 PPP1R10Q96QC0 940 aaKnown RBP2.61□□□□□ -1.99
SPG11-223ENST00000560858 XPO6Q96QU8 1125 aaKnown RBP2.61□□□□□ -1.99
SPG11-223ENST00000560858 NAP1L3Q99457 506 aaPredicted RBP2.61□□□□□ -1.99
SPG11-223ENST00000560858 PSMD1Q99460 953 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 TRIM51Q9BSJ1 452 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 STRA6Q9BX79 667 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 STK33Q9BYT3 514 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 COA1Q9GZY4 146 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 DDX47Q9H0S4 455 aaKnown RBP2.61□□□□□ -1.99
SPG11-223ENST00000560858 GOLPH3Q9H4A6 298 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 POLD4Q9HCU8 107 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 ERVK-5Q9HDB9 667 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 TUFT1Q9NNX1 390 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 SLC40A1Q9NP59 571 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 LANCL2Q9NS86 450 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 DMAC2Q9NW81 257 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 KCND2Q9NZV8 630 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 TBC1D7Q9P0N9 293 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 PCYOX1Q9UHG3 505 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 DDX20Q9UHI6 824 aaKnown RBP2.61□□□□□ -1.99
SPG11-223ENST00000560858 SLC23A1Q9UHI7 598 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 SERPINB13Q9UIV8 391 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 MCM8Q9UJA3 840 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 RASAL2Q9UJF2 1139 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 AMFRQ9UKV5 643 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 ODF2LQ9ULJ1 636 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 UTP11Q9Y3A2 253 aaKnown RBP2.61□□□□□ -1.99
SPG11-223ENST00000560858 AFG3L2Q9Y4W6 797 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 PCDHA3Q9Y5H8 950 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 NR2E3Q9Y5X4 410 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 ZNF236Q9UL36 1845 aa2.61□□□□□ -1.99
SPG11-223ENST00000560858 WDR27A2RRH5 827 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 CDHR4A6H8M9 788 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 ANKRD62A6NC57 917 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 FAM90A10PA6NDY2 464 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 CFAP73A6NFT4 308 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 CCDC169A6NNP5 214 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 PRRT4C9JH25 899 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 PRSS44E7EML9 344 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 FAM86B1E9PN63 330 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 H0YHG0 523 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 O00370 1275 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 DNM1LO00429 736 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 WNT10BO00744 389 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 MSH4O15457 936 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 P4HA2O15460 535 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 ASAP2O43150 1006 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 MGRN1O60291 552 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 CAND2O75155 1236 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 PSMD10O75832 226 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 BBOX1O75936 387 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 GCNT3O95395 438 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 AGTP01019 485 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 FGGP02679 453 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 KRT18P05783 430 aaKnown RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 FAM163BP0C2L3 166 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 FAM86B2P0C5J1 330 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 CCDC172P0C7W6 258 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 NR2F6P10588 404 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 ALADP13716 330 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 GYS1P13807 737 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 CHN1P15882 459 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 CTNNA2P26232 953 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 CHRNA3P32297 505 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 HPDP32754 393 aaPredicted RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 PSMC2P35998 433 aaKnown RBP2.6□□□□□ -1.99
SPG11-223ENST00000560858 STAT1P42224 750 aa2.6□□□□□ -1.99
SPG11-223ENST00000560858 RPL21P46778 160 aaKnown RBP2.6□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms