RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 RAD51Q06609 339 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 ZNF33AQ06730 810 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 GRM3Q14832 879 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 PPP2R5EQ16537 467 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 DPY19L3Q6ZPD9 716 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 BZW1Q7L1Q6 419 aaKnown RBP13.22□□□□□ -0.29
NEDD8-208ENST00000560427 PEX26Q7Z412 305 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 NT5DC3Q86UY8 548 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 CACUL1Q86Y37 369 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 BBS5Q8N3I7 341 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 FAM160A2Q8N612 972 aaPredicted RBP13.22□□□□□ -0.29
NEDD8-208ENST00000560427 PIP4K2CQ8TBX8 421 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 NSMCE1Q8WV22 266 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 FOXJ1Q92949 421 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 ERLEC1Q96DZ1 483 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 TSGA13Q96PP4 275 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 ALS2CR12Q96Q35 445 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 HEPHQ9BQS7 1158 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 BTBD1Q9H0C5 482 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 DUSP15Q9H1R2 295 aaPredicted RBP13.22□□□□□ -0.29
NEDD8-208ENST00000560427 TNKS2Q9H2K2 1166 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 FBXL12Q9NXK8 326 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 WSB2Q9NYS7 404 aaPredicted RBP13.22□□□□□ -0.29
NEDD8-208ENST00000560427 TRIM10Q9UDY6 481 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 SEPT3Q9UH03 358 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 MBD1Q9UIS9 605 aaPredicted RBP13.22□□□□□ -0.29
NEDD8-208ENST00000560427 AMFRQ9UKV5 643 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 EFR3BQ9Y2G0 817 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 MFHAS1Q9Y4C4 1052 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 WDFY4Q6ZS81 3184 aa13.22□□□□□ -0.29
NEDD8-208ENST00000560427 EML5Q05BV3 1969 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 J3KR12 359 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 MID1O15344 667 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 BNIP3LO60238 219 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 MAFKO60675 156 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 NDUFS2O75306 463 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 PALMO75781 387 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 EPN2O95208 641 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 POP4O95707 220 aaKnown RBP13.21□□□□□ -0.29
NEDD8-208ENST00000560427 CTSLP07711 333 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 BCKDHBP21953 392 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 HOXD12P35452 270 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 CETN2P41208 172 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 CSNK1DP48730 415 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 DNA2P51530 1060 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 RWDD2BP57060 319 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 RPL6Q02878 288 aaKnown RBP13.21□□□□□ -0.29
NEDD8-208ENST00000560427 NSUN2Q08J23 767 aaKnown RBP eCLIP13.21□□□□□ -0.29
NEDD8-208ENST00000560427 LBRQ14739 615 aaKnown RBP13.21□□□□□ -0.29
NEDD8-208ENST00000560427 MFSD7Q6UXD7 560 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 SPOCD1Q6ZMY3 1216 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 UBL4BQ8N7F7 174 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 PLD5Q8N7P1 536 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 KRT35Q92764 455 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 RNF25Q96BH1 459 aaPredicted RBP13.21□□□□□ -0.29
NEDD8-208ENST00000560427 HDAC11Q96DB2 347 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 TOE1Q96GM8 510 aaKnown RBP13.21□□□□□ -0.29
NEDD8-208ENST00000560427 PSKH2Q96QS6 385 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 OMDQ99983 421 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 CINPQ9BW66 212 aaPredicted RBP13.21□□□□□ -0.29
NEDD8-208ENST00000560427 TM6SF2Q9BZW4 377 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 BRD8Q9H0E9 1235 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 KDM4CQ9H3R0 1056 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 DYRK4Q9NR20 520 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 DTLQ9NZJ0 730 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 HECAQ9UBI9 543 aaPredicted RBP13.21□□□□□ -0.29
NEDD8-208ENST00000560427 LHX3Q9UBR4 397 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 AMACRQ9UHK6 382 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 ACTL7AQ9Y615 435 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 CAPN6Q9Y6Q1 641 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 WASF2Q9Y6W5 498 aa13.21□□□□□ -0.29
NEDD8-208ENST00000560427 hCG_1818297A0A087WSY0 165 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 A0A1W2PP55 124 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 PPP1R12AO14974 1030 aaPredicted RBP13.2□□□□□ -0.3
NEDD8-208ENST00000560427 LRP3O75074 770 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 RNASEH2AO75792 299 aaKnown RBP13.2□□□□□ -0.3
NEDD8-208ENST00000560427 TGM2P21980 687 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 CCNCP24863 283 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 ITGB7P26010 798 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 DRD3P35462 400 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 MARCKSL1P49006 195 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 NR2C2P49116 596 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 GBE1Q04446 702 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 HNRNPDQ14103 355 aaKnown RBP13.2□□□□□ -0.3
NEDD8-208ENST00000560427 CYTH1Q15438 398 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 MYLK3Q32MK0 819 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 RALGPS1Q5JS13 557 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 LYSMD4Q5XG99 296 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 LEKR1Q6ZMV7 388 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 ARHGAP36Q6ZRI8 547 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 RFX6Q8HWS3 928 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 CCDC50Q8IVM0 306 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 HDDC3Q8N4P3 179 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 AADATQ8N5Z0 425 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 CHST14Q8NCH0 376 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 GANCQ8TET4 914 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 MAML1Q92585 1016 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 RUBCNQ92622 972 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 ZNF419Q96HQ0 510 aaPredicted RBP13.2□□□□□ -0.3
NEDD8-208ENST00000560427 TUBGCP5Q96RT8 1024 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms