RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 ATP1A1P05023 1023 aaKnown RBP10.24□□□□□ -0.77
USP3-216ENST00000559873 PECAM1P16284 738 aaPredicted RBP10.24□□□□□ -0.77
USP3-216ENST00000559873 COL9A1P20849 921 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 CES1P23141 567 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 ATP5OP48047 213 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 AP1S1P61966 158 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 OTUD4Q01804 1114 aaKnown RBP10.24□□□□□ -0.77
USP3-216ENST00000559873 CSTF1Q05048 431 aaKnown RBP10.24□□□□□ -0.77
USP3-216ENST00000559873 KLF1Q13351 362 aaPredicted RBP10.24□□□□□ -0.77
USP3-216ENST00000559873 NOMO1Q15155 1222 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 ANGPT1Q15389 498 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 HEATR6Q6AI08 1181 aaKnown RBP10.24□□□□□ -0.77
USP3-216ENST00000559873 KIAA1211LQ6NV74 962 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 ZC3H14Q6PJT7 736 aaKnown RBP10.24□□□□□ -0.77
USP3-216ENST00000559873 KIAA1324Q6UXG2 1013 aaKnown RBP10.24□□□□□ -0.77
USP3-216ENST00000559873 TMEM92Q6UXU6 159 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 LEKR1Q6ZMV7 388 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 C11orf74Q86VG3 221 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 RASSF3Q86WH2 238 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 SLC13A5Q86YT5 568 aaPredicted RBP10.24□□□□□ -0.77
USP3-216ENST00000559873 TMPRSS6Q8IU80 811 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 NETO2Q8NC67 525 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 ACTL9Q8TC94 416 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 MAML1Q92585 1016 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 PTPRN2Q92932 1015 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 SIPA1Q96FS4 1042 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 PSKH2Q96QS6 385 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 VAT1Q99536 393 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 HEPHQ9BQS7 1158 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 OSBPL1AQ9BXW6 950 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 TM6SF2Q9BZW4 377 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 RSPH9Q9H1X1 276 aaPredicted RBP10.24□□□□□ -0.77
USP3-216ENST00000559873 KCNH6Q9H252 994 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 DYRK4Q9NR20 520 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 HOMER3Q9NSC5 361 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 HECAQ9UBI9 543 aaPredicted RBP10.24□□□□□ -0.77
USP3-216ENST00000559873 IL36AQ9UHA7 158 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 SNX12Q9UMY4 172 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 HCN4Q9Y3Q4 1203 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 TTLL3Q9Y4R7 772 aa10.24□□□□□ -0.77
USP3-216ENST00000559873 ATG2BQ96BY7 2078 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 GOLGA6L10A0A0M3HER8 536 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 K7ESF4 209 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 PGRMC1O00264 195 aaKnown RBP10.23□□□□□ -0.77
USP3-216ENST00000559873 AXIN1O15169 862 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 CD160O95971 181 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 IL1BP01584 269 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 CCNB1P14635 433 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 GABRG2P18507 467 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 NDUFV2P19404 249 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 C5AR1P21730 350 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 CA4P22748 312 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 SERPINA4P29622 427 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 CHRNA3P32297 505 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 PSMD8P48556 350 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 CSNK1DP48730 415 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 CCNHP51946 323 aaPredicted RBP10.23□□□□□ -0.77
USP3-216ENST00000559873 COPAP53621 1224 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 EIF3EP60228 445 aaKnown RBP10.23□□□□□ -0.77
USP3-216ENST00000559873 IFI35P80217 286 aaPredicted RBP10.23□□□□□ -0.77
USP3-216ENST00000559873 ADCY2Q08462 1091 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 NSUN2Q08J23 767 aaKnown RBP eCLIP10.23□□□□□ -0.77
USP3-216ENST00000559873 SLC10A7Q0GE19 358 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 SLC10A2Q12908 348 aaPredicted RBP10.23□□□□□ -0.77
USP3-216ENST00000559873 PRKD1Q15139 912 aaPredicted RBP10.23□□□□□ -0.77
USP3-216ENST00000559873 LONRF2Q1L5Z9 754 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 SLC45A4Q5BKX6 768 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 CFAP58Q5T655 872 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 C9orf64Q5T6V5 341 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 AADACL2Q6P093 401 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 NPNTQ6UXI9 565 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 DPY19L3Q6ZPD9 716 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 KBTBD6Q86V97 674 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 ZC3H18Q86VM9 953 aaKnown RBP10.23□□□□□ -0.77
USP3-216ENST00000559873 LONP2Q86WA8 852 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 CACUL1Q86Y37 369 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 TP53INP2Q8IXH6 220 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 STK40Q8N2I9 435 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 PAF1Q8N7H5 531 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 TMIEQ8NEW7 156 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 MDGA1Q8NFP4 955 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 OR2A12Q8NGT7 310 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 GRIN3AQ8TCU5 1115 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 HTR3CQ8WXA8 447 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 MRGPRX1Q96LB2 322 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 TUBGCP5Q96RT8 1024 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 OSBPL9Q96SU4 736 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 LGMNQ99538 433 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 MGME1Q9BQP7 344 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 TNKS2Q9H2K2 1166 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 ZDHHC6Q9H6R6 413 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 RBM22Q9NW64 420 aaKnown RBP eCLIP10.23□□□□□ -0.776e-10■■■■□ 22.8
USP3-216ENST00000559873 SEPT10Q9P0V9 454 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 NCKAP1Q9Y2A7 1128 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 MUC6Q6W4X9 2439 aa10.23□□□□□ -0.77
USP3-216ENST00000559873 CACNA1IQ9P0X4 2223 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 NYNRINQ9P2P1 1898 aaKnown RBP10.22□□□□□ -0.77
USP3-216ENST00000559873 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.22□□□□□ -0.77
USP3-216ENST00000559873 A0A1W2PQ67 120 aa10.22□□□□□ -0.77
USP3-216ENST00000559873 ANTXRLA6NF34 631 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms