RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 TRIM38O00635 465 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 CLOCKO15516 846 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 MTHFD1P11586 935 aaKnown RBP11.48□□□□□ -0.57
LDLR-208ENST00000558518 LMO2P25791 158 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 NIPAL4Q0D2K0 466 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 FAM83EQ2M2I3 478 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 TREML2Q5T2D2 321 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 ZNF618Q5T7W0 954 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 IER5Q5VY09 327 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 DHFR2Q86XF0 187 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 DNAJB14Q8TBM8 379 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 FNDC8Q8TC99 324 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 ACMSDQ8TDX5 336 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 ZNF670Q9BS34 389 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 MRIQ9BWK5 157 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 DGCR6LQ9BY27 220 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 DEFB129Q9H1M3 183 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 R3HDMLQ9H3Y0 253 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 CXorf21Q9HAI6 301 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 BLOC1S6Q9UL45 172 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 MAFBQ9Y5Q3 323 aaPredicted RBP11.48□□□□□ -0.57
LDLR-208ENST00000558518 TADA2AO75478 443 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 SRP72O76094 671 aaKnown RBP11.48□□□□□ -0.57
LDLR-208ENST00000558518 MT-CYBP00156 380 aaPredicted RBP11.48□□□□□ -0.57
LDLR-208ENST00000558518 UGT1A1P22309 533 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 UGT1A4P22310 534 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 UGT1A3P35503 534 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 UGT1A5P35504 534 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 BACE1P56817 501 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 PRKAA1Q13131 559 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 SEMA5AQ13591 1074 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 OLFML1Q6UWY5 402 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 PBXIP1Q96AQ6 731 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 OSBPL6Q9BZF3 934 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 ING2Q9H160 280 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 CLK4Q9HAZ1 481 aaKnown RBP11.48□□□□□ -0.57
LDLR-208ENST00000558518 LRRC4Q9HBW1 653 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 MYOZ2Q9NPC6 264 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 CNOT6Q9ULM6 557 aaKnown RBP11.48□□□□□ -0.57
LDLR-208ENST00000558518 ACOT9Q9Y305 439 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 ACKR2O00590 384 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 GRID2O43424 1007 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 DDHD2O94830 711 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 TXNP10599 105 aaKnown RBP11.48□□□□□ -0.57
LDLR-208ENST00000558518 ZNF23P17027 643 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 TPSB2P20231 275 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 CD247P20963 164 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 LIMK2P53671 638 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 EMP3P54852 163 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 STX1BP61266 288 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 TPSAB1Q15661 275 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 NOMO2Q5JPE7 1267 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 LIPMQ5VYY2 423 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 GADL1Q6ZQY3 521 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 SETD3Q86TU7 594 aaPredicted RBP11.48□□□□□ -0.57
LDLR-208ENST00000558518 SMYD1Q8NB12 490 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 TMEM174Q8WUU8 243 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 ISOC1Q96CN7 298 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 QKIQ96PU8 341 aaKnown RBP eCLIP11.48□□□□□ -0.57
LDLR-208ENST00000558518 STN1Q9H668 368 aaKnown RBP11.48□□□□□ -0.57
LDLR-208ENST00000558518 EPS8L2Q9H6S3 715 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 TMEM134Q9H6X4 195 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 PLGRKTQ9HBL7 147 aa11.48□□□□□ -0.57
LDLR-208ENST00000558518 DLX3O60479 287 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 FARP2O94887 1054 aaPredicted RBP11.47□□□□□ -0.57
LDLR-208ENST00000558518 ATE1O95260 518 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 EEF1DP29692 281 aaKnown RBP11.47□□□□□ -0.57
LDLR-208ENST00000558518 BCAT1P54687 386 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 RBP5P82980 135 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 LAMC2Q13753 1193 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 TRIM25Q14258 630 aaKnown RBP11.47□□□□□ -0.57
LDLR-208ENST00000558518 MXD4Q14582 209 aaPredicted RBP11.47□□□□□ -0.57
LDLR-208ENST00000558518 NR1D2Q14995 579 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 TAZQ16635 292 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 SLC10A6Q3KNW5 377 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 VPS26BQ4G0F5 336 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 CHSY3Q70JA7 882 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 SAPCD2Q86UD0 394 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 RBM12BQ8IXT5 1001 aaKnown RBP11.47□□□□□ -0.57
LDLR-208ENST00000558518 DCBLD1Q8N8Z6 715 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 GBA2Q9HCG7 927 aaPredicted RBP11.47□□□□□ -0.57
LDLR-208ENST00000558518 SNTG2Q9NY99 539 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.47□□□□□ -0.576e-8■□□□□ 8.2
LDLR-208ENST00000558518 ZNF214Q9UL59 606 aaPredicted RBP11.47□□□□□ -0.57
LDLR-208ENST00000558518 CSADQ9Y600 493 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 KLRG2A4D1S0 409 aaPredicted RBP11.47□□□□□ -0.57
LDLR-208ENST00000558518 FAM72CH0Y354 149 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 HTRA2O43464 458 aaPredicted RBP11.47□□□□□ -0.57
LDLR-208ENST00000558518 MAFO75444 373 aaPredicted RBP11.47□□□□□ -0.57
LDLR-208ENST00000558518 CRCPO75575 148 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 ZFXP17010 805 aaPredicted RBP11.47□□□□□ -0.57
LDLR-208ENST00000558518 MAGP20916 626 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 ALDH4A1P30038 563 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 HSPA13P48723 471 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 TPI1P60174 286 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 CXCL9Q07325 125 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 PIGFQ07326 219 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 FAM72AQ5TYM5 149 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 EGFLAMQ63HQ2 1017 aa11.47□□□□□ -0.57
LDLR-208ENST00000558518 FAM72DQ6L9T8 149 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms