RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 DFFAO00273 331 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 SEPT4O43236 478 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 ITM2AO43736 263 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 USP12O75317 370 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 LYPLA1O75608 230 aaPredicted RBP7.38□□□□□ -1.23
VPS13C-206ENST00000558338 CABYRO75952 493 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 TOP3BO95985 862 aaKnown RBP7.38□□□□□ -1.23
VPS13C-206ENST00000558338 PRKCGP05129 697 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 C2P06681 752 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 CRABP2P29373 138 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 THPOP40225 353 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 IDH3AP50213 366 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 SLC5A3P53794 718 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 AP2B1P63010 937 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 ARHGAP8P85298 464 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 YWHAHQ04917 246 aaPredicted RBP7.38□□□□□ -1.23
VPS13C-206ENST00000558338 KDSRQ06136 332 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 MTA1Q13330 715 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 TUBB3Q13509 450 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 SLC12A1Q13621 1099 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 ITGA9Q13797 1035 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 HSF5Q4G112 596 aaPredicted RBP7.38□□□□□ -1.23
VPS13C-206ENST00000558338 KHDC1Q4VXA5 237 aaKnown RBP7.38□□□□□ -1.23
VPS13C-206ENST00000558338 ACSBG2Q5FVE4 666 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 FAM26DQ5JW98 314 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 RABGAP1LQ5R372 815 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 CERCAMQ5T4B2 595 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 LIPMQ5VYY2 423 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 PKN3Q6P5Z2 889 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 CES3Q6UWW8 571 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 ZYG11AQ6WRX3 759 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 LRRC74BQ6ZQY2 392 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 RAPH1Q70E73 1250 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 CMC1Q7Z7K0 106 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 SETD3Q86TU7 594 aaPredicted RBP7.38□□□□□ -1.23
VPS13C-206ENST00000558338 TP53INP2Q8IXH6 220 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 ULK2Q8IYT8 1036 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 DCP1BQ8IZD4 617 aaKnown RBP7.38□□□□□ -1.23
VPS13C-206ENST00000558338 KIRREL3Q8IZU9 778 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 NETO2Q8NC67 525 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 TRPV1Q8NER1 839 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 PXYLP1Q8TE99 480 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 MFSD3Q96ES6 412 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 ZNF778Q96MU6 729 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 MCMBPQ9BTE3 642 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 FSD1LQ9BXM9 530 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 TMEM30AQ9NV96 361 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 CACNG4Q9UBN1 327 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 VTI1BQ9UEU0 232 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 PLA2G4CQ9UP65 541 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 PLXNA3P51805 1871 aa7.38□□□□□ -1.23
VPS13C-206ENST00000558338 A0A087X1B8 175 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 TMEM189-UBE2V1I3L0A0 370 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 MAP3K7O43318 606 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 SIN3BO75182 1162 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 PAGE1O75459 146 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 POMCP01189 267 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 SLC10A3P09131 477 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 CST5P28325 142 aaPredicted RBP7.37□□□□□ -1.23
VPS13C-206ENST00000558338 ADSLP30566 484 aaPredicted RBP7.37□□□□□ -1.23
VPS13C-206ENST00000558338 CD52P31358 61 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 SERPINB5P36952 375 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 GRIK1P39086 918 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 CPA2P48052 419 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 CSRP3P50461 194 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 ACTR3P61158 418 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 MRPS35P82673 323 aaKnown RBP7.37□□□□□ -1.23
VPS13C-206ENST00000558338 THOC5Q13769 683 aaKnown RBP7.37□□□□□ -1.23
VPS13C-206ENST00000558338 USP10Q14694 798 aaKnown RBP7.37□□□□□ -1.23
VPS13C-206ENST00000558338 NFE2Q16621 373 aaPredicted RBP7.37□□□□□ -1.23
VPS13C-206ENST00000558338 PPM1JQ5JR12 505 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 KIAA0930Q6ICG6 404 aaPredicted RBP7.37□□□□□ -1.23
VPS13C-206ENST00000558338 RGMBQ6NW40 437 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 MSANTD2Q6P1R3 559 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 AAGABQ6PD74 315 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 KIAA0408Q6ZU52 694 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 ZC3HC1Q86WB0 502 aaKnown RBP7.37□□□□□ -1.23
VPS13C-206ENST00000558338 ARHGAP12Q8IWW6 846 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 RTL3Q8N8U3 475 aaKnown RBP7.37□□□□□ -1.23
VPS13C-206ENST00000558338 OR10T2Q8NGX3 314 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 CALML6Q8TD86 181 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 FUBP3Q96I24 572 aaKnown RBP eCLIP7.37□□□□□ -1.23
VPS13C-206ENST00000558338 CELF6Q96J87 481 aaKnown RBP7.37□□□□□ -1.23
VPS13C-206ENST00000558338 C1orf74Q96LT6 269 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 AGAP2Q99490 1192 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 EBF4Q9BQW3 602 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 THTPAQ9BU02 230 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 ILKAPQ9H0C8 392 aaPredicted RBP7.37□□□□□ -1.23
VPS13C-206ENST00000558338 FBXO44Q9H4M3 255 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 ZNF395Q9H8N7 513 aaPredicted RBP7.37□□□□□ -1.23
VPS13C-206ENST00000558338 AGO3Q9H9G7 860 aaKnown RBP7.37□□□□□ -1.23
VPS13C-206ENST00000558338 OXSMQ9NWU1 459 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 NEU3Q9UQ49 428 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 LRCH1Q9Y2L9 728 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 RAP2CQ9Y3L5 183 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 TCAF1Q9Y4C2 921 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 CASP8AP2Q9UKL3 1982 aa7.37□□□□□ -1.23
VPS13C-206ENST00000558338 G3V2L1 256 aa7.36□□□□□ -1.23
VPS13C-206ENST00000558338 CCNT2O60583 730 aaKnown RBP7.36□□□□□ -1.23
VPS13C-206ENST00000558338 MAFKO60675 156 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms