RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 TBC1D3HP0C7X1 549 aa8.83□□□□□ -1
USP3-208ENST00000558285 SRCP12931 536 aa8.83□□□□□ -1
USP3-208ENST00000558285 KRT10P13645 584 aa8.83□□□□□ -1
USP3-208ENST00000558285 XPAP23025 273 aaPredicted RBP8.83□□□□□ -1
USP3-208ENST00000558285 CHRNA3P32297 505 aa8.83□□□□□ -1
USP3-208ENST00000558285 GGCXP38435 758 aa8.83□□□□□ -1
USP3-208ENST00000558285 CTSOP43234 321 aaPredicted RBP8.83□□□□□ -1
USP3-208ENST00000558285 GRIA4P48058 902 aa8.83□□□□□ -1
USP3-208ENST00000558285 STK19P49842 368 aaPredicted RBP8.83□□□□□ -1
USP3-208ENST00000558285 RENBPP51606 427 aa8.83□□□□□ -1
USP3-208ENST00000558285 RACK1P63244 317 aaKnown RBP8.83□□□□□ -1
USP3-208ENST00000558285 OVGP1Q12889 678 aa8.83□□□□□ -1
USP3-208ENST00000558285 KRT81Q14533 505 aa8.83□□□□□ -1
USP3-208ENST00000558285 RFTN1Q14699 578 aaPredicted RBP8.83□□□□□ -1
USP3-208ENST00000558285 SPA17Q15506 151 aa8.83□□□□□ -1
USP3-208ENST00000558285 SLC18A3Q16572 532 aa8.83□□□□□ -1
USP3-208ENST00000558285 ZSCAN26Q16670 478 aa8.83□□□□□ -1
USP3-208ENST00000558285 INO80DQ53TQ3 878 aaPredicted RBP8.83□□□□□ -1
USP3-208ENST00000558285 CARD16Q5EG05 197 aa8.83□□□□□ -1
USP3-208ENST00000558285 MANEALQ5VSG8 457 aa8.83□□□□□ -1
USP3-208ENST00000558285 TBC1D3GQ6DHY5 549 aa8.83□□□□□ -1
USP3-208ENST00000558285 TBC1D3CQ6IPX1 549 aa8.83□□□□□ -1
USP3-208ENST00000558285 FBXL19Q6PCT2 694 aa8.83□□□□□ -1
USP3-208ENST00000558285 SARM1Q6SZW1 724 aa8.83□□□□□ -1
USP3-208ENST00000558285 NYAP1Q6ZVC0 841 aa8.83□□□□□ -1
USP3-208ENST00000558285 Q6ZVU0 165 aa8.83□□□□□ -1
USP3-208ENST00000558285 LRRC49Q8IUZ0 686 aa8.83□□□□□ -1
USP3-208ENST00000558285 RHOT2Q8IXI1 618 aa8.83□□□□□ -1
USP3-208ENST00000558285 ZNF683Q8IZ20 524 aa8.83□□□□□ -1
USP3-208ENST00000558285 TBC1D3Q8IZP1 549 aaPredicted RBP8.83□□□□□ -1
USP3-208ENST00000558285 UMODL1-AS1Q8N2C9 162 aa8.83□□□□□ -1
USP3-208ENST00000558285 CCDC185Q8N715 623 aa8.83□□□□□ -1
USP3-208ENST00000558285 PIP4K2CQ8TBX8 421 aa8.83□□□□□ -1
USP3-208ENST00000558285 TEKT4Q8WW24 435 aa8.83□□□□□ -1
USP3-208ENST00000558285 PTPRN2Q92932 1015 aa8.83□□□□□ -1
USP3-208ENST00000558285 RMDN1Q96DB5 314 aa8.83□□□□□ -1
USP3-208ENST00000558285 ERLEC1Q96DZ1 483 aa8.83□□□□□ -1
USP3-208ENST00000558285 C16orf45Q96MC5 204 aaPredicted RBP8.83□□□□□ -1
USP3-208ENST00000558285 DNAJC7Q99615 494 aa8.83□□□□□ -1
USP3-208ENST00000558285 HEPHQ9BQS7 1158 aa8.83□□□□□ -1
USP3-208ENST00000558285 TMUB1Q9BVT8 246 aa8.83□□□□□ -1
USP3-208ENST00000558285 C1QTNF7Q9BXJ2 289 aa8.83□□□□□ -1
USP3-208ENST00000558285 SP110Q9HB58 689 aa8.83□□□□□ -1
USP3-208ENST00000558285 MED4Q9NPJ6 270 aa8.83□□□□□ -1
USP3-208ENST00000558285 RCOR3Q9P2K3 495 aaPredicted RBP8.83□□□□□ -1
USP3-208ENST00000558285 DNAI1Q9UI46 699 aa8.83□□□□□ -1
USP3-208ENST00000558285 ANAPC7Q9UJX3 599 aa8.83□□□□□ -1
USP3-208ENST00000558285 ZBTB32Q9Y2Y4 487 aaPredicted RBP8.83□□□□□ -1
USP3-208ENST00000558285 PCDHB9Q9Y5E1 797 aa8.83□□□□□ -1
USP3-208ENST00000558285 OR51B4Q9Y5P0 310 aa8.83□□□□□ -1
USP3-208ENST00000558285 TCRBV5S1A1TA0A578 114 aa8.83□□□□□ -1
USP3-208ENST00000558285 LNP1A1A4G5 178 aa8.83□□□□□ -1
USP3-208ENST00000558285 FAM170AA1A519 330 aa8.83□□□□□ -1
USP3-208ENST00000558285 NEMP1O14524 444 aa8.83□□□□□ -1
USP3-208ENST00000558285 NEBLO76041 1014 aa8.83□□□□□ -1
USP3-208ENST00000558285 POP4O95707 220 aaKnown RBP8.83□□□□□ -1
USP3-208ENST00000558285 ENGP17813 658 aa8.83□□□□□ -1
USP3-208ENST00000558285 CSRP1P21291 193 aaKnown RBP8.83□□□□□ -1
USP3-208ENST00000558285 TGM1P22735 817 aa8.83□□□□□ -1
USP3-208ENST00000558285 NEK3P51956 506 aa8.83□□□□□ -1
USP3-208ENST00000558285 ATXN1P54253 815 aaKnown RBP8.83□□□□□ -1
USP3-208ENST00000558285 IRX4P78413 519 aa8.83□□□□□ -1
USP3-208ENST00000558285 UAP1L1Q3KQV9 507 aa8.83□□□□□ -1
USP3-208ENST00000558285 PPP6R3Q5H9R7 873 aaPredicted RBP8.83□□□□□ -1
USP3-208ENST00000558285 TRNP1Q6NT89 227 aa8.83□□□□□ -1
USP3-208ENST00000558285 TMCO3Q6UWJ1 677 aa8.83□□□□□ -1
USP3-208ENST00000558285 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.83□□□□□ -1
USP3-208ENST00000558285 SYT10Q6XYQ8 523 aa8.83□□□□□ -1
USP3-208ENST00000558285 ZCCHC9Q8N567 271 aaKnown RBP8.83□□□□□ -1
USP3-208ENST00000558285 DEFB119Q8N690 84 aa8.83□□□□□ -1
USP3-208ENST00000558285 NIPA2Q8N8Q9 360 aa8.83□□□□□ -1
USP3-208ENST00000558285 FRS2Q8WU20 508 aa8.83□□□□□ -1
USP3-208ENST00000558285 ARHGEF2Q92974 986 aaKnown RBP8.83□□□□□ -1
USP3-208ENST00000558285 MYEOVQ96EZ4 313 aa8.83□□□□□ -1
USP3-208ENST00000558285 ALG14Q96F25 216 aa8.83□□□□□ -1
USP3-208ENST00000558285 P2RY11Q96G91 374 aa8.83□□□□□ -1
USP3-208ENST00000558285 MYO19Q96H55 970 aa8.83□□□□□ -1
USP3-208ENST00000558285 NUP85Q9BW27 656 aa8.83□□□□□ -1
USP3-208ENST00000558285 FAM107BQ9H098 131 aa8.83□□□□□ -1
USP3-208ENST00000558285 SLC6A17Q9H1V8 727 aa8.83□□□□□ -1
USP3-208ENST00000558285 L2HGDHQ9H9P8 463 aa8.83□□□□□ -1
USP3-208ENST00000558285 AASDHPPTQ9NRN7 309 aa8.83□□□□□ -1
USP3-208ENST00000558285 UBA2Q9UBT2 640 aaPredicted RBP8.83□□□□□ -1
USP3-208ENST00000558285 EIF2B4Q9UI10 523 aaKnown RBP8.83□□□□□ -1
USP3-208ENST00000558285 PPM1HQ9ULR3 514 aa8.83□□□□□ -1
USP3-208ENST00000558285 SPAG17Q6Q759 2223 aa8.82□□□□□ -1
USP3-208ENST00000558285 A0A0D9SEW6 157 aa8.82□□□□□ -1
USP3-208ENST00000558285 A0A1W2PQ67 120 aa8.82□□□□□ -1
USP3-208ENST00000558285 C4orf47A7E2U8 309 aa8.82□□□□□ -1
USP3-208ENST00000558285 UPK3BL1B0FP48 263 aa8.82□□□□□ -1
USP3-208ENST00000558285 UPK3BL2E5RIL1 263 aa8.82□□□□□ -1
USP3-208ENST00000558285 MFAP3LO75121 409 aa8.82□□□□□ -1
USP3-208ENST00000558285 ZRANB2O95218 330 aaKnown RBP eCLIP8.82□□□□□ -1
USP3-208ENST00000558285 CPP00450 1065 aa8.82□□□□□ -1
USP3-208ENST00000558285 CYP1A2P05177 515 aa8.82□□□□□ -1
USP3-208ENST00000558285 ZNF883P0CG24 379 aa8.82□□□□□ -1
USP3-208ENST00000558285 HOXB3P14651 431 aaPredicted RBP8.82□□□□□ -1
USP3-208ENST00000558285 MIPP30301 263 aa8.82□□□□□ -1
USP3-208ENST00000558285 AKT2P31751 481 aa8.82□□□□□ -1
USP3-208ENST00000558285 CYLC1P35663 651 aaPredicted RBP8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms