RNA–Protein interactions for RNA: ENST00000557477.1

PRPF39-212, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 724 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-212ENST00000557477 HMGA2P52926 109 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 EIF5P55010 431 aaKnown RBP4.98□□□□□ -1.61
PRPF39-212ENST00000557477 UFM1P61960 85 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 C5orf22Q49AR2 442 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 STRIP1Q5VSL9 837 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 HAUS3Q68CZ6 603 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 C17orf99Q6UX52 265 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 LRIG3Q6UXM1 1119 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 TNIP2Q8NFZ5 429 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.98□□□□□ -1.61
PRPF39-212ENST00000557477 HASPINQ8TF76 798 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 HSPH1Q92598 858 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 DPF1Q92782 380 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 KIF1BPQ96EK5 621 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 CHCHD6Q9BRQ6 235 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 PIMREGQ9BSJ6 248 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 SCNM1Q9BWG6 230 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.98□□□□□ -1.61
PRPF39-212ENST00000557477 CXorf56Q9H5V9 222 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 TERF2IPQ9NYB0 399 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 HCN3Q9P1Z3 774 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 KLHL13Q9P2N7 655 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 PEMTQ9UBM1 199 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 SARDHQ9UL12 918 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 MTUS2Q5JR59 1369 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 TNRQ92752 1358 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 A2ML1A8K2U0 1454 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 PLEKHH2Q8IVE3 1493 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 SHANK2Q9UPX8 1470 aa4.98□□□□□ -1.61
PRPF39-212ENST00000557477 CDC42BPAQ5VT25 1732 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 POLR2AP24928 1970 aaKnown RBP4.97□□□□□ -1.61
PRPF39-212ENST00000557477 TCOF1Q13428 1488 aaKnown RBP4.97□□□□□ -1.61
PRPF39-212ENST00000557477 OR6C68A6NDL8 312 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 PABPN1LA6NDY0 278 aaKnown RBP4.97□□□□□ -1.61
PRPF39-212ENST00000557477 HMGB1P1B2RPK0 211 aaPredicted RBP4.97□□□□□ -1.61
PRPF39-212ENST00000557477 LDLRAD4O15165 306 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 USO1O60763 962 aaKnown RBP4.97□□□□□ -1.61
PRPF39-212ENST00000557477 LATS1O95835 1130 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 NUDT3O95989 172 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 HLA-DQA2P01906 255 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 BMP5P22003 454 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 CYP2J2P51589 502 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 ELLP55199 621 aaPredicted RBP4.97□□□□□ -1.61
PRPF39-212ENST00000557477 EFNB1P98172 346 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 CFHR1Q03591 330 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 TBCEQ15813 527 aaPredicted RBP4.97□□□□□ -1.61
PRPF39-212ENST00000557477 RPE65Q16518 533 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 PLK5Q496M5 336 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 CEP78Q5JTW2 689 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 VWA5B1Q5TIE3 1220 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 MEX3CQ5U5Q3 659 aaKnown RBP4.97□□□□□ -1.61
PRPF39-212ENST00000557477 INO80CQ6PI98 192 aaPredicted RBP4.97□□□□□ -1.61
PRPF39-212ENST00000557477 ATF7IPQ6VMQ6 1270 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 RD3Q7Z3Z2 195 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 CCDC25Q86WR0 208 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 GHDCQ8N2G8 530 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 METTL6Q8TCB7 284 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 ADAMTS15Q8TE58 950 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 FRG2BQ96QU4 278 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 SH2D3AQ9BRG2 576 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 PCDHB16Q9NRJ7 776 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 PPP1R14DQ9NXH3 145 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 TAS2R10Q9NYW0 307 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 IPO11Q9UI26 975 aaKnown RBP4.97□□□□□ -1.61
PRPF39-212ENST00000557477 DHDHQ9UQ10 334 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 KAT6AQ92794 2004 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 RNF17Q9BXT8 1623 aaKnown RBP4.97□□□□□ -1.61
PRPF39-212ENST00000557477 WDR17Q8IZU2 1322 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 KDM3AQ9Y4C1 1321 aa4.97□□□□□ -1.61
PRPF39-212ENST00000557477 ADGBQ8N7X0 1667 aa4.96□□□□□ -1.61
PRPF39-212ENST00000557477 INO80Q9ULG1 1556 aaPredicted RBP4.96□□□□□ -1.62
PRPF39-212ENST00000557477 FYCO1Q9BQS8 1478 aa4.96□□□□□ -1.62
PRPF39-212ENST00000557477 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP4.96□□□□□ -1.62
PRPF39-212ENST00000557477 C17orf113A0A1B0GUU1 675 aa4.96□□□□□ -1.62
PRPF39-212ENST00000557477 F5H0A9 414 aaPredicted RBP4.96□□□□□ -1.62
PRPF39-212ENST00000557477 NEURL1O76050 574 aa4.96□□□□□ -1.62
PRPF39-212ENST00000557477 DDX58O95786 925 aaKnown RBP4.96□□□□□ -1.62
PRPF39-212ENST00000557477 PRKCGP05129 697 aa4.96□□□□□ -1.62
PRPF39-212ENST00000557477 UBL4AP11441 157 aa4.96□□□□□ -1.62
PRPF39-212ENST00000557477 KLRC2P26717 231 aa4.96□□□□□ -1.62
PRPF39-212ENST00000557477 CHRNA5P30532 468 aa4.96□□□□□ -1.62
PRPF39-212ENST00000557477 EFNA5P52803 228 aa4.96□□□□□ -1.62
PRPF39-212ENST00000557477 SLC12A2P55011 1212 aa4.96□□□□□ -1.62
PRPF39-212ENST00000557477 HSF1Q00613 529 aa4.96□□□□□ -1.62
PRPF39-212ENST00000557477 ERV3-1Q14264 604 aa4.96□□□□□ -1.62
PRPF39-212ENST00000557477 KRTAP15-1Q3LI76 137 aa4.96□□□□□ -1.62
PRPF39-212ENST00000557477 SLC9B1Q4ZJI4 515 aa4.96□□□□□ -1.62
PRPF39-212ENST00000557477 SLC45A4Q5BKX6 768 aa4.96□□□□□ -1.62
PRPF39-212ENST00000557477 EARS2Q5JPH6 523 aaKnown RBP4.96□□□□□ -1.62
PRPF39-212ENST00000557477 TMTC3Q6ZXV5 915 aa4.96□□□□□ -1.62
PRPF39-212ENST00000557477 CYB5R4Q7L1T6 521 aa4.96□□□□□ -1.62
PRPF39-212ENST00000557477 DIS3L2Q8IYB7 885 aaKnown RBP4.96□□□□□ -1.62
PRPF39-212ENST00000557477 ADGRF4Q8IZF3 695 aa4.96□□□□□ -1.62
PRPF39-212ENST00000557477 CNTROBQ8N137 903 aa4.96□□□□□ -1.62
PRPF39-212ENST00000557477 CPXM2Q8N436 756 aa4.96□□□□□ -1.62
PRPF39-212ENST00000557477 DNAAF1Q8NEP3 725 aa4.96□□□□□ -1.62
PRPF39-212ENST00000557477 WIPF2Q8TF74 440 aaPredicted RBP4.96□□□□□ -1.62
PRPF39-212ENST00000557477 NR1H4Q96RI1 486 aaPredicted RBP4.96□□□□□ -1.62
PRPF39-212ENST00000557477 BARD1Q99728 777 aaKnown RBP4.96□□□□□ -1.62
PRPF39-212ENST00000557477 IFT27Q9BW83 186 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms