RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 RAD9BQ6WBX8 426 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 LEKR1Q6ZMV7 388 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 CPNE8Q86YQ8 564 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 LRRC49Q8IUZ0 686 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 TMEM139Q8IV31 216 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 NPWQ8N729 165 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 CHST14Q8NCH0 376 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 OR2T34Q8NGX1 318 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 FAM131CQ96AQ9 280 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 PPP1R16AQ96I34 528 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 ZNF670Q9BS34 389 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 C6orf106Q9H6K1 298 aaPredicted RBP10.87□□□□□ -0.67
LINC00239-201ENST00000556973 PDFQ9HBH1 243 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 DYRK4Q9NR20 520 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 ETNK2Q9NVF9 386 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 UBA2Q9UBT2 640 aaPredicted RBP10.87□□□□□ -0.67
LINC00239-201ENST00000556973 SERGEFQ9UGK8 458 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 TPX2Q9ULW0 747 aaKnown RBP10.87□□□□□ -0.67
LINC00239-201ENST00000556973 WASF2Q9Y6W5 498 aa10.87□□□□□ -0.67
LINC00239-201ENST00000556973 FAM47DPA6NHR8 397 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 BTNL10A8MVZ5 291 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 ZNF487B1APH4 448 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 KPNA3O00505 521 aaPredicted RBP10.86□□□□□ -0.67
LINC00239-201ENST00000556973 KRIT1O00522 736 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 BUB1BO60566 1050 aaPredicted RBP10.86□□□□□ -0.67
LINC00239-201ENST00000556973 PALMO75781 387 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 TMCC1O94876 653 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 SERPINF2P08697 491 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 SDHBP21912 280 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 COMTP21964 271 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 MAOBP27338 520 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 GJC1P36383 396 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 METAP1P53582 386 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 GSDMDP57764 484 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 RHOAP61586 193 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 NSUN2Q08J23 767 aaKnown RBP eCLIP10.86□□□□□ -0.67
LINC00239-201ENST00000556973 CNTN1Q12860 1018 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 MMRN1Q13201 1228 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 PAFAH1B3Q15102 231 aaKnown RBP10.86□□□□□ -0.67
LINC00239-201ENST00000556973 SF3A2Q15428 464 aaKnown RBP10.86□□□□□ -0.67
LINC00239-201ENST00000556973 ODF2Q5BJF6 829 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 TRIM61Q5EBN2 209 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 TMCO4Q5TGY1 634 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 KIAA0895LQ68EN5 471 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 NCEH1Q6PIU2 408 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 VSIG1Q86XK7 387 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 RHOT1Q8IXI2 618 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 TXLNBQ8N3L3 684 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 RYBPQ8N488 228 aaPredicted RBP10.86□□□□□ -0.67
LINC00239-201ENST00000556973 OR14C36Q8NHC7 312 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 BIRC7Q96CA5 298 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 GDAP1L1Q96MZ0 367 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 ZNF599Q96NL3 588 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 NUSAP1Q9BXS6 441 aaKnown RBP10.86□□□□□ -0.67
LINC00239-201ENST00000556973 OSBPL1AQ9BXW6 950 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 HDAC8Q9BY41 377 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 CPEB1Q9BZB8 566 aaKnown RBP10.86□□□□□ -0.67
LINC00239-201ENST00000556973 TM6SF2Q9BZW4 377 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 SP110Q9HB58 689 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 DDX56Q9NY93 547 aaKnown RBP10.86□□□□□ -0.67
LINC00239-201ENST00000556973 SUSD2Q9UGT4 822 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 EVLQ9UI08 416 aaPredicted RBP10.86□□□□□ -0.67
LINC00239-201ENST00000556973 IPO11Q9UI26 975 aaKnown RBP10.86□□□□□ -0.67
LINC00239-201ENST00000556973 SLC6A14Q9UN76 642 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 TFR2Q9UP52 801 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 ZBTB32Q9Y2Y4 487 aaPredicted RBP10.86□□□□□ -0.67
LINC00239-201ENST00000556973 MFHAS1Q9Y4C4 1052 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 ALG6Q9Y672 507 aa10.86□□□□□ -0.67
LINC00239-201ENST00000556973 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.86□□□□□ -0.67
LINC00239-201ENST00000556973 TBC1D3DA0A087WVF3 549 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 TBC1D3IA0A087WXS9 549 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 TBC1D3EA0A087X179 549 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 TBC1D3KA0A087X1G2 549 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 A0A1B0GTW7 788 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 TBC1D3FA6NER0 549 aaPredicted RBP10.85□□□□□ -0.67
LINC00239-201ENST00000556973 PATE3B3GLJ2 98 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 TBC1D3LB9A6J9 549 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 PLK4O00444 970 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 PJA2O43164 708 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 PLRG1O43660 514 aaKnown RBP10.85□□□□□ -0.67
LINC00239-201ENST00000556973 SPOPO43791 374 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 MAFKO60675 156 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 FSBPO95073 299 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 IGSF6O95976 241 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 TBC1D3HP0C7X1 549 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 ITGB7P26010 798 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 CD27P26842 260 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 CSNK1DP48730 415 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 CCR5P51681 352 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 ADPRHP54922 357 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 IRX4P78413 519 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 GRM3Q14832 879 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 POM121L1PQ3SYA9 428 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 AASDHQ4L235 1098 aaPredicted RBP10.85□□□□□ -0.67
LINC00239-201ENST00000556973 ZNF805Q5CZA5 627 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 AGBL4Q5VU57 503 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 TBC1D3GQ6DHY5 549 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 TBC1D3CQ6IPX1 549 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 NEK5Q6P3R8 708 aa10.85□□□□□ -0.67
LINC00239-201ENST00000556973 ARHGAP36Q6ZRI8 547 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms