RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 TRIM49BA6NDI0 452 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 LRRC72A6NJI9 287 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 TTC34A8MYJ7 566 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 M0QYV0 167 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 TBL1XO60907 577 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 CSO75390 466 aaKnown RBP10.31□□□□□ -0.76
SCFD1-220ENST00000556486 IGLV3-25P01717 112 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 SRPRAP08240 638 aaKnown RBP10.31□□□□□ -0.76
SCFD1-220ENST00000556486 LCP1P13796 627 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 EDN3P14138 238 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 ETFBP38117 255 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 GPD2P43304 727 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 TBX4P57082 545 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 CETN1Q12798 172 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 SFSWAPQ12872 951 aaKnown RBP10.31□□□□□ -0.76
SCFD1-220ENST00000556486 STIM1Q13586 685 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 CST6Q15828 149 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 MS4A13Q5J8X5 152 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 C3orf38Q5JPI3 329 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 TTI2Q6NXR4 508 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 MMS22LQ6ZRQ5 1243 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 MFN1Q8IWA4 741 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 LINC00528Q8N1L1 170 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 PPM1KQ8N3J5 372 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 AADATQ8N5Z0 425 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 OR2T34Q8NGX1 318 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 DQX1Q8TE96 717 aaKnown RBP10.31□□□□□ -0.76
SCFD1-220ENST00000556486 RFFLQ8WZ73 363 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 SMARCE1Q969G3 411 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 FAM131CQ96AQ9 280 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 TIMMDC1Q9NPL8 285 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 LATS2Q9NRM7 1088 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 SIRPGQ9P1W8 387 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 IL17BQ9UHF5 180 aa10.31□□□□□ -0.76
SCFD1-220ENST00000556486 HEMK1Q9Y5R4 338 aaPredicted RBP10.31□□□□□ -0.76
SCFD1-220ENST00000556486 TBC1D3DA0A087WVF3 549 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 TBC1D3IA0A087WXS9 549 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 TBC1D3EA0A087X179 549 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 TBC1D3KA0A087X1G2 549 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 A0A1B0GVM2 712 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 TYW5A2RUC4 315 aaKnown RBP10.3□□□□□ -0.76
SCFD1-220ENST00000556486 TBC1D3FA6NER0 549 aaPredicted RBP10.3□□□□□ -0.76
SCFD1-220ENST00000556486 TBC1D3LB9A6J9 549 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 CASC3O15234 703 aaKnown RBP10.3□□□□□ -0.76
SCFD1-220ENST00000556486 YKT6O15498 198 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 OPA1O60313 960 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 RTN2O75298 545 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 TBC1D3HP0C7X1 549 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 ACP1P24666 158 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 SLC8A1P32418 973 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 CSKP41240 450 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 ACADSBP45954 432 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 RGS7P49802 495 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 CSRP3P50461 194 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 ADPRHP54922 357 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 UCNP55089 124 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 ST8SIA6P61647 398 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 RPS24P62847 133 aaKnown RBP10.3□□□□□ -0.76
SCFD1-220ENST00000556486 LRMPQ12912 555 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 ILKQ13418 452 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 ZSCAN23Q3MJ62 389 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 C9orf64Q5T6V5 341 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 TBC1D3GQ6DHY5 549 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 TBC1D3CQ6IPX1 549 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 CRTC1Q6UUV9 634 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 LYSMD3Q7Z3D4 306 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 TMEM110Q86TL2 294 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 TRIM59Q8IWR1 403 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 TBC1D3Q8IZP1 549 aaPredicted RBP10.3□□□□□ -0.76
SCFD1-220ENST00000556486 STK40Q8N2I9 435 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 SLC25A45Q8N413 288 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 EXD3Q8N9H8 876 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 RNF217Q8TC41 542 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 CLEC4CQ8WTT0 213 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 KAT5Q92993 513 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 MYEOVQ96EZ4 313 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 WBP1Q96G27 269 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 ZNF578Q96N58 590 aaPredicted RBP10.3□□□□□ -0.76
SCFD1-220ENST00000556486 ASCL3Q9NQ33 180 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 SATB2Q9UPW6 733 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 PCDHB4Q9Y5E5 795 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 FLNCQ14315 2725 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 KIF26BQ2KJY2 2108 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 DOPEY2Q9Y3R5 2298 aa10.3□□□□□ -0.76
SCFD1-220ENST00000556486 A0A1W2PNU3 283 aaPredicted RBP10.29□□□□□ -0.76
SCFD1-220ENST00000556486 LATO43561 262 aa10.29□□□□□ -0.76
SCFD1-220ENST00000556486 RNASEH1O60930 286 aaKnown RBP10.29□□□□□ -0.76
SCFD1-220ENST00000556486 LUC7L3O95232 432 aaKnown RBP10.29□□□□□ -0.76
SCFD1-220ENST00000556486 GNA14O95837 355 aa10.29□□□□□ -0.76
SCFD1-220ENST00000556486 VAV1P15498 845 aa10.29□□□□□ -0.76
SCFD1-220ENST00000556486 BMP6P22004 513 aa10.29□□□□□ -0.76
SCFD1-220ENST00000556486 CCR5P51681 352 aa10.29□□□□□ -0.76
SCFD1-220ENST00000556486 PLK1P53350 603 aa10.29□□□□□ -0.76
SCFD1-220ENST00000556486 SLC12A1Q13621 1099 aa10.29□□□□□ -0.76
SCFD1-220ENST00000556486 CDH18Q13634 790 aa10.29□□□□□ -0.76
SCFD1-220ENST00000556486 ELAVL3Q14576 367 aaKnown RBP10.29□□□□□ -0.76
SCFD1-220ENST00000556486 DCAF6Q58WW2 860 aa10.29□□□□□ -0.76
SCFD1-220ENST00000556486 SLC45A4Q5BKX6 768 aa10.29□□□□□ -0.76
SCFD1-220ENST00000556486 FSCBQ5H9T9 825 aa10.29□□□□□ -0.76
SCFD1-220ENST00000556486 PITRM1Q5JRX3 1037 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms