RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 DUPD1Q68J44 220 aa11.11□□□□□ -0.63
SHMT2-218ENST00000555213 NCBP2-AS2Q69YL0 99 aa11.11□□□□□ -0.63
SHMT2-218ENST00000555213 CCDC137Q6PK04 289 aaKnown RBP11.11□□□□□ -0.63
SHMT2-218ENST00000555213 LINGO4Q6UY18 593 aa11.11□□□□□ -0.63
SHMT2-218ENST00000555213 BZW1Q7L1Q6 419 aaKnown RBP11.11□□□□□ -0.63
SHMT2-218ENST00000555213 DSG4Q86SJ6 1040 aa11.11□□□□□ -0.63
SHMT2-218ENST00000555213 BBS5Q8N3I7 341 aa11.11□□□□□ -0.63
SHMT2-218ENST00000555213 SH2D3CQ8N5H7 860 aa11.11□□□□□ -0.63
SHMT2-218ENST00000555213 ATL2Q8NHH9 583 aa11.11□□□□□ -0.63
SHMT2-218ENST00000555213 ACTL9Q8TC94 416 aa11.11□□□□□ -0.63
SHMT2-218ENST00000555213 NKD2Q969F2 451 aaPredicted RBP11.11□□□□□ -0.63
SHMT2-218ENST00000555213 RPL10LQ96L21 214 aaKnown RBP11.11□□□□□ -0.63
SHMT2-218ENST00000555213 MRGPRX3Q96LB0 322 aa11.11□□□□□ -0.63
SHMT2-218ENST00000555213 HHIPQ96QV1 700 aa11.11□□□□□ -0.63
SHMT2-218ENST00000555213 FAM126AQ9BYI3 521 aaPredicted RBP11.11□□□□□ -0.63
SHMT2-218ENST00000555213 SLC39A8Q9C0K1 460 aa11.11□□□□□ -0.63
SHMT2-218ENST00000555213 KLC2Q9H0B6 622 aa11.11□□□□□ -0.63
SHMT2-218ENST00000555213 IRF2BPLQ9H1B7 796 aa11.11□□□□□ -0.63
SHMT2-218ENST00000555213 NOL6Q9H6R4 1146 aaKnown RBP11.11□□□□□ -0.63
SHMT2-218ENST00000555213 C10orf88Q9H8K7 445 aa11.11□□□□□ -0.63
SHMT2-218ENST00000555213 UBA2Q9UBT2 640 aaPredicted RBP11.11□□□□□ -0.63
SHMT2-218ENST00000555213 HCN2Q9UL51 889 aa11.11□□□□□ -0.63
SHMT2-218ENST00000555213 KMT2EQ8IZD2 1858 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 DOCK4Q8N1I0 1966 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 A0A1W2PQF6 199 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 TTC34A8MYJ7 566 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 PPP1R12AO14974 1030 aaPredicted RBP11.1□□□□□ -0.63
SHMT2-218ENST00000555213 ATP9BO43861 1147 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 PRAMEF11O60813 436 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 ZMPSTE24O75844 475 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 SRCP12931 536 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 HLA-EP13747 358 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 TGM2P21980 687 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 GLDCP23378 1020 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 ECHS1P30084 290 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 HOXA6P31267 233 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 FNTAP49354 379 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 ARF5P84085 180 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 OTUD4Q01804 1114 aaKnown RBP11.1□□□□□ -0.63
SHMT2-218ENST00000555213 IL10RBQ08334 325 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 GALNT2Q10471 571 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 CAMK2GQ13555 558 aaPredicted RBP11.1□□□□□ -0.63
SHMT2-218ENST00000555213 ELAVL3Q14576 367 aaKnown RBP11.1□□□□□ -0.63
SHMT2-218ENST00000555213 ZNF528Q3MIS6 628 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 TMCO4Q5TGY1 634 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 ANO7Q6IWH7 933 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 TIGD7Q6NT04 549 aaPredicted RBP11.1□□□□□ -0.63
SHMT2-218ENST00000555213 C22orf39Q6P5X5 142 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 ZC3H14Q6PJT7 736 aaKnown RBP11.1□□□□□ -0.63
SHMT2-218ENST00000555213 PRUNE1Q86TP1 453 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 JAMLQ86YT9 394 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 ARHGAP12Q8IWW6 846 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 TP53INP2Q8IXH6 220 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 PGBD3Q8N328 593 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 PCDH20Q8N6Y1 951 aaKnown RBP11.1□□□□□ -0.63
SHMT2-218ENST00000555213 ZNF366Q8N895 744 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 GLIS1Q8NBF1 620 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 OR2T3Q8NH03 318 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 HMGB4Q8WW32 186 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 ZNF599Q96NL3 588 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 KCNH6Q9H252 994 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 USP29Q9HBJ7 922 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 EPB41L5Q9HCM4 733 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 HOMER3Q9NSC5 361 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 IPO11Q9UI26 975 aaKnown RBP11.1□□□□□ -0.63
SHMT2-218ENST00000555213 SLCO3A1Q9UIG8 710 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 HEY1Q9Y5J3 304 aa11.1□□□□□ -0.63
SHMT2-218ENST00000555213 MUC22E2RYF6 1773 aaPredicted RBP11.1□□□□□ -0.63
SHMT2-218ENST00000555213 CCDC163A0A0D9SF12 145 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 GOLGA6L10A0A0M3HER8 536 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 ANTXRLA6NF34 631 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 FAM187AA6NFU0 413 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 WASH3PC4AMC7 463 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 APOC4-APOC2K7ER74 178 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 K7ESF4 209 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 ALOX15BO15296 676 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 BNIP3LO60238 219 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 NEBLO76041 1014 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 HEXIM1O94992 359 aaKnown RBP11.09□□□□□ -0.63
SHMT2-218ENST00000555213 APOC2P02655 101 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 GARSP41250 739 aaKnown RBP11.09□□□□□ -0.63
SHMT2-218ENST00000555213 NR2C2P49116 596 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 CARSP49589 748 aaKnown RBP11.09□□□□□ -0.63
SHMT2-218ENST00000555213 DRG2P55039 364 aaKnown RBP11.09□□□□□ -0.63
SHMT2-218ENST00000555213 RHOAP61586 193 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 DR1Q01658 176 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 GUCY2DQ02846 1103 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 GBE1Q04446 702 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 SFSWAPQ12872 951 aaKnown RBP11.09□□□□□ -0.63
SHMT2-218ENST00000555213 DHX34Q14147 1143 aaKnown RBP11.09□□□□□ -0.63
SHMT2-218ENST00000555213 ZNF235Q14590 738 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 RFTN1Q14699 578 aaPredicted RBP11.09□□□□□ -0.63
SHMT2-218ENST00000555213 PDK1Q15118 436 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 NOMO1Q15155 1222 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 DLG2Q15700 870 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 TTC31Q49AM3 519 aaPredicted RBP11.09□□□□□ -0.63
SHMT2-218ENST00000555213 INO80DQ53TQ3 878 aaPredicted RBP11.09□□□□□ -0.63
SHMT2-218ENST00000555213 FAM182AQ5T1J6 154 aa11.09□□□□□ -0.63
SHMT2-218ENST00000555213 ZNF776Q68DI1 518 aaPredicted RBP11.09□□□□□ -0.63
SHMT2-218ENST00000555213 KIAA1211LQ6NV74 962 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms