RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ATMINO43313 823 aaPredicted RBP16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 AP1G1O43747 822 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 RNF8O76064 485 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 TBC1D3HP0C7X1 549 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 SKILP12757 684 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 CD38P28907 300 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 HCAR3P49019 387 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 CCT8P50990 548 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 CCNHP51946 323 aaPredicted RBP16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 NDST2P52849 883 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 SETMARQ53H47 684 aaPredicted RBP16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 TDRD12Q587J7 1177 aaKnown RBP16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 SLC45A4Q5BKX6 768 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 ERMARDQ5T6L9 678 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 TBC1D3GQ6DHY5 549 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 TBC1D3CQ6IPX1 549 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 ERN2Q76MJ5 926 aaKnown RBP16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 PRPF39Q86UA1 669 aaKnown RBP16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 TBC1D3Q8IZP1 549 aaPredicted RBP16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 VOPP1Q96AW1 172 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 ARRDC3Q96B67 414 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 OSBPL1AQ9BXW6 950 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 TNKS2Q9H2K2 1166 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 ERVMER34-1Q9H9K5 563 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 IL21RQ9HBE5 538 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 DYRK4Q9NR20 520 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 IFNKQ9P0W0 207 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 PCOLCE2Q9UKZ9 415 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 AP4E1Q9UPM8 1137 aa16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 LUC7L2Q9Y383 392 aaKnown RBP16.34■□□□□ 0.21
CCDC88C-209ENST00000554872 BNIP3LO60238 219 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 SH3BP5O60239 455 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 MAGEC1O60732 1142 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 LRCH4O75427 683 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 LEFTY1O75610 366 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 TRIM16O95361 564 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 KCNA4P22459 653 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 NEK3P51956 506 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 C21orf59P57076 290 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 TPI1P60174 286 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 SNRPD1P62314 119 aaKnown RBP16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 SERINC3Q13530 473 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 TRIM14Q14142 442 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 SUZ12Q15022 739 aaKnown RBP16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 ARSIQ5FYB1 569 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 KCNT1Q5JUK3 1230 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 ADAT2Q7Z6V5 191 aaKnown RBP16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 OXR1Q8N573 874 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 NIPA2Q8N8Q9 360 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 MFSD2AQ8NA29 543 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 TMEM145Q8NBT3 493 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 OR2AP1Q8NGE2 309 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 RAB7BQ96AH8 199 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 SERAC1Q96JX3 654 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 PEBP4Q96S96 227 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 SNRNP25Q9BV90 132 aaKnown RBP16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 TRIM7Q9C029 511 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 LRRC19Q9H756 370 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 NENFQ9UMX5 172 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 FCF1Q9Y324 198 aaKnown RBP16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 MFHAS1Q9Y4C4 1052 aa16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.33■□□□□ 0.2
CCDC88C-209ENST00000554872 A0A1B0GTQ1 180 aa16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 RASA4BC9J798 803 aa16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 PRAMEF26H0Y7S4 382 aa16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 PLK4O00444 970 aa16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 RASA4O43374 803 aa16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 CREB3O43889 395 aa16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 PRPSAP2O60256 369 aa16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 TMCC1O94876 653 aa16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 WNT1P04628 370 aa16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 MIPP30301 263 aa16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 NXPH1P58417 271 aa16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 ZNF284Q2VY69 593 aa16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 TMEM259Q4ZIN3 620 aa16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 AFMIDQ63HM1 303 aa16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 HORMAD1Q86X24 394 aa16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 KNL1Q8NG31 2342 aa16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 FAM174AQ8TBP5 190 aa16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 GRIN3AQ8TCU5 1115 aa16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 HMCESQ96FZ2 354 aa16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 ELF4Q99607 663 aaPredicted RBP16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 CDC6Q99741 560 aa16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 XPO4Q9C0E2 1151 aaKnown RBP16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 PDFQ9HBH1 243 aa16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 HECAQ9UBI9 543 aaPredicted RBP16.32■□□□□ 0.2
CCDC88C-209ENST00000554872 COL5A1P20908 1838 aaPredicted RBP16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 EPG5Q9HCE0 2579 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 A0A087X0T9 212 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 H0Y8X5 98 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 TLR4O00206 839 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 RNF103O00237 685 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 CBFA2T2O43439 604 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 POP4O95707 220 aaKnown RBP16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 CYP1A2P05177 515 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 FAM228BP0C875 321 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 ADRB3P13945 408 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 GRK6P43250 576 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 RXRGP48443 463 aa16.31■□□□□ 0.2
CCDC88C-209ENST00000554872 SIM1P81133 766 aaPredicted RBP16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms