RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 MAATS1Q7Z4T9 603 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 C14orf80Q86SX3 495 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 HDDC3Q8N4P3 179 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 ZCCHC9Q8N567 271 aaKnown RBP12.72□□□□□ -0.37
SHMT2-214ENST00000554604 DNASE2BQ8WZ79 361 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 KRT35Q92764 455 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 CFAP57Q96MR6 1250 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 FEM1AQ9BSK4 669 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 AP1M1Q9BXS5 423 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 ADAM33Q9BZ11 813 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 MUC3BQ9H195 1237 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 PCED1AQ9H1Q7 454 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 CAPN10Q9HC96 672 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 EPB41L5Q9HCM4 733 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 FSCN3Q9NQT6 498 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 ADAM22Q9P0K1 906 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 EIF2B4Q9UI10 523 aaKnown RBP12.72□□□□□ -0.37
SHMT2-214ENST00000554604 SLC25A13Q9UJS0 675 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 ANAPC7Q9UJX3 599 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 VPS28Q9UK41 221 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 SCML1Q9UN30 329 aa12.72□□□□□ -0.37
SHMT2-214ENST00000554604 TP53BP1Q12888 1972 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-214ENST00000554604 DOCK9Q9BZ29 2069 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 A0A1B0GTW7 788 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 MYO1FO00160 1098 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 ARHGAP33O14559 1287 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 PROSCO94903 275 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 KCNK5O95279 499 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 ADRB1P08588 477 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 SDC4P31431 198 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 MAN1A1P33908 653 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 NOVA1P51513 510 aaKnown RBP12.71□□□□□ -0.37
SHMT2-214ENST00000554604 RWDD2BP57060 319 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 FAM193AP78312 1265 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 GUCY2DQ02846 1103 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 CUL1Q13616 776 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 CST6Q15828 149 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 CDO1Q16878 200 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 ARL13BQ3SXY8 428 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 C9orf64Q5T6V5 341 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 PSAPL1Q6NUJ1 521 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 FAM131BQ86XD5 332 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 MMAAQ8IVH4 418 aaKnown RBP12.71□□□□□ -0.37
SHMT2-214ENST00000554604 GSPT2Q8IYD1 628 aaKnown RBP12.71□□□□□ -0.37
SHMT2-214ENST00000554604 EMC1Q8N766 993 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 BTBD6Q96KE9 485 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 OMDQ99983 421 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 PABPC3Q9H361 631 aaKnown RBP12.71□□□□□ -0.37
SHMT2-214ENST00000554604 C6orf106Q9H6K1 298 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-214ENST00000554604 SGK2Q9HBY8 427 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 ANLNQ9NQW6 1124 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 PARVAQ9NVD7 372 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 FBXL12Q9NXK8 326 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 HPCAL4Q9UM19 191 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 SNX10Q9Y5X0 201 aa12.71□□□□□ -0.37
SHMT2-214ENST00000554604 TMEM131Q92545 1883 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 FAM187AA6NFU0 413 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 FAM47DPA6NHR8 397 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 E9PAM4 449 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 MID1O15344 667 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 BCAT2O15382 392 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-214ENST00000554604 OPHN1O60890 802 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 RNASEH2AO75792 299 aaKnown RBP12.7□□□□□ -0.38
SHMT2-214ENST00000554604 CNTN5O94779 1100 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 FSBPO95073 299 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 IL1BP01584 269 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 RHOCP08134 193 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 C7P10643 843 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 OAS2P29728 719 aaKnown RBP12.7□□□□□ -0.38
SHMT2-214ENST00000554604 OR1E1P30953 314 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 SLC8A1P32418 973 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 PSMD8P48556 350 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 MARCKSL1P49006 195 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 ZNF211Q13398 564 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-214ENST00000554604 MAMLD1Q13495 774 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 DHX34Q14147 1143 aaKnown RBP12.7□□□□□ -0.38
SHMT2-214ENST00000554604 ELAVL3Q14576 367 aaKnown RBP12.7□□□□□ -0.38
SHMT2-214ENST00000554604 CYP1B1Q16678 543 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 C5orf22Q49AR2 442 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 SH3PXD2AQ5TCZ1 1133 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 TRNP1Q6NT89 227 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 USP30Q70CQ3 517 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 TFAP2DQ7Z6R9 452 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 DSG4Q86SJ6 1040 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 STK40Q8N2I9 435 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 MINDY1Q8N5J2 469 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 RXFP2Q8WXD0 754 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 CASKIN2Q8WXE0 1202 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 SEC14L1Q92503 715 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 PTPRN2Q92932 1015 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 C1orf74Q96LT6 269 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 RUNDC3BQ96NL0 473 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 HAPLN3Q96S86 360 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 C2orf49Q9BVC5 232 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-214ENST00000554604 DDX47Q9H0S4 455 aaKnown RBP12.7□□□□□ -0.38
SHMT2-214ENST00000554604 MED4Q9NPJ6 270 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 TMPRSS4Q9NRS4 437 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 TBC1D30Q9Y2I9 924 aa12.7□□□□□ -0.38
SHMT2-214ENST00000554604 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.7□□□□□ -0.38
SHMT2-214ENST00000554604 PLXNA2O75051 1894 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms