RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 NEUROG2Q9H2A3 272 aa23.21■■□□□ 1.31
TDP1-206ENST00000553569 SMOC1Q9H4F8 434 aa23.21■■□□□ 1.31
TDP1-206ENST00000553569 HECAQ9UBI9 543 aaPredicted RBP23.21■■□□□ 1.31
TDP1-206ENST00000553569 TRIM10Q9UDY6 481 aa23.21■■□□□ 1.31
TDP1-206ENST00000553569 IPO11Q9UI26 975 aaKnown RBP23.21■■□□□ 1.31
TDP1-206ENST00000553569 FAM186AA6NE01 2351 aa23.2■■□□□ 1.3
TDP1-206ENST00000553569 SHROOM3Q8TF72 1996 aa23.2■■□□□ 1.3
TDP1-206ENST00000553569 A0A0U1RQJ8 604 aa23.2■■□□□ 1.3
TDP1-206ENST00000553569 BCLAF3A2AJT9 711 aaKnown RBP23.2■■□□□ 1.3
TDP1-206ENST00000553569 FAM47DPA6NHR8 397 aa23.2■■□□□ 1.3
TDP1-206ENST00000553569 BTNL10A8MVZ5 291 aa23.2■■□□□ 1.3
TDP1-206ENST00000553569 PJA2O43164 708 aa23.2■■□□□ 1.3
TDP1-206ENST00000553569 LEFTY1O75610 366 aa23.2■■□□□ 1.3
TDP1-206ENST00000553569 GSRP00390 522 aa23.2■■□□□ 1.3
TDP1-206ENST00000553569 PRNPP04156 253 aa23.2■■□□□ 1.3
TDP1-206ENST00000553569 DRD3P35462 400 aa23.2■■□□□ 1.3
TDP1-206ENST00000553569 SNRPD1P62314 119 aaKnown RBP23.2■■□□□ 1.3
TDP1-206ENST00000553569 INO80DQ53TQ3 878 aaPredicted RBP23.2■■□□□ 1.3
TDP1-206ENST00000553569 SPDYCQ5MJ68 293 aa23.2■■□□□ 1.3
TDP1-206ENST00000553569 NCBP2-AS2Q69YL0 99 aa23.2■■□□□ 1.3
TDP1-206ENST00000553569 TXLNBQ8N3L3 684 aa23.2■■□□□ 1.3
TDP1-206ENST00000553569 ATPAF2Q8N5M1 289 aa23.2■■□□□ 1.3
TDP1-206ENST00000553569 CCDC112Q8NEF3 446 aa23.2■■□□□ 1.3
TDP1-206ENST00000553569 OR2AP1Q8NGE2 309 aa23.2■■□□□ 1.3
TDP1-206ENST00000553569 FAF2Q96CS3 445 aa23.2■■□□□ 1.3
TDP1-206ENST00000553569 EXOC2Q96KP1 924 aa23.2■■□□□ 1.3
TDP1-206ENST00000553569 HEPHQ9BQS7 1158 aa23.2■■□□□ 1.3
TDP1-206ENST00000553569 C6orf106Q9H6K1 298 aaPredicted RBP23.2■■□□□ 1.3
TDP1-206ENST00000553569 SGK2Q9HBY8 427 aa23.2■■□□□ 1.3
TDP1-206ENST00000553569 PARD6AQ9NPB6 346 aa23.2■■□□□ 1.3
TDP1-206ENST00000553569 DDX56Q9NY93 547 aaKnown RBP23.2■■□□□ 1.3
TDP1-206ENST00000553569 PCDHGA5Q9Y5G8 931 aa23.2■■□□□ 1.3
TDP1-206ENST00000553569 WASF2Q9Y6W5 498 aa23.2■■□□□ 1.3
TDP1-206ENST00000553569 RNF103O00237 685 aa23.19■■□□□ 1.3
TDP1-206ENST00000553569 PSTPIP1O43586 416 aa23.19■■□□□ 1.3
TDP1-206ENST00000553569 ITPKAP23677 461 aa23.19■■□□□ 1.3
TDP1-206ENST00000553569 GKP32189 559 aa23.19■■□□□ 1.3
TDP1-206ENST00000553569 IL10RBQ08334 325 aa23.19■■□□□ 1.3
TDP1-206ENST00000553569 KIF5AQ12840 1032 aa23.19■■□□□ 1.3
TDP1-206ENST00000553569 CYTH1Q15438 398 aa23.19■■□□□ 1.3
TDP1-206ENST00000553569 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP23.19■■□□□ 1.3
TDP1-206ENST00000553569 TMIEQ8NEW7 156 aa23.19■■□□□ 1.3
TDP1-206ENST00000553569 SNX19Q92543 992 aa23.19■■□□□ 1.3
TDP1-206ENST00000553569 FOXJ1Q92949 421 aa23.19■■□□□ 1.3
TDP1-206ENST00000553569 RNF25Q96BH1 459 aaPredicted RBP23.19■■□□□ 1.3
TDP1-206ENST00000553569 GDAP1L1Q96MZ0 367 aa23.19■■□□□ 1.3
TDP1-206ENST00000553569 LHX3Q9UBR4 397 aa23.19■■□□□ 1.3
TDP1-206ENST00000553569 FZD4Q9ULV1 537 aa23.19■■□□□ 1.3
TDP1-206ENST00000553569 RIF1Q5UIP0 2472 aaKnown RBP23.18■■□□□ 1.3
TDP1-206ENST00000553569 MACROD2A1Z1Q3 448 aa23.18■■□□□ 1.3
TDP1-206ENST00000553569 C3orf70A6NLC5 250 aaPredicted RBP23.18■■□□□ 1.3
TDP1-206ENST00000553569 KRIT1O00522 736 aa23.18■■□□□ 1.3
TDP1-206ENST00000553569 ARHGAP6O43182 974 aa23.18■■□□□ 1.3
TDP1-206ENST00000553569 PALMO75781 387 aa23.18■■□□□ 1.3
TDP1-206ENST00000553569 MAP3K6O95382 1288 aa23.18■■□□□ 1.3
TDP1-206ENST00000553569 IGSF6O95976 241 aa23.18■■□□□ 1.3
TDP1-206ENST00000553569 CNTN1Q12860 1018 aa23.18■■□□□ 1.3
TDP1-206ENST00000553569 DCAF12L1Q5VU92 463 aa23.18■■□□□ 1.3
TDP1-206ENST00000553569 KIAA2013Q8IYS2 634 aa23.18■■□□□ 1.3
TDP1-206ENST00000553569 RGL4Q8IZJ4 473 aa23.18■■□□□ 1.3
TDP1-206ENST00000553569 PQLC3Q8N755 202 aa23.18■■□□□ 1.3
TDP1-206ENST00000553569 OR14C36Q8NHC7 312 aa23.18■■□□□ 1.3
TDP1-206ENST00000553569 TRAF3IP1Q8TDR0 691 aaPredicted RBP23.18■■□□□ 1.3
TDP1-206ENST00000553569 ARRDC3Q96B67 414 aa23.18■■□□□ 1.3
TDP1-206ENST00000553569 ZNF419Q96HQ0 510 aaPredicted RBP23.18■■□□□ 1.3
TDP1-206ENST00000553569 RNF157Q96PX1 679 aa23.18■■□□□ 1.3
TDP1-206ENST00000553569 CINPQ9BW66 212 aaPredicted RBP23.18■■□□□ 1.3
TDP1-206ENST00000553569 DYRK4Q9NR20 520 aa23.18■■□□□ 1.3
TDP1-206ENST00000553569 SEMA4GQ9NTN9 838 aa23.18■■□□□ 1.3
TDP1-206ENST00000553569 EP300Q09472 2414 aaPredicted RBP23.18■■□□□ 1.3
TDP1-206ENST00000553569 PIEZO1Q92508 2521 aa23.17■■□□□ 1.3
TDP1-206ENST00000553569 LRP3O75074 770 aa23.17■■□□□ 1.3
TDP1-206ENST00000553569 MARCKSL1P49006 195 aa23.17■■□□□ 1.3
TDP1-206ENST00000553569 ADPRHP54922 357 aa23.17■■□□□ 1.3
TDP1-206ENST00000553569 PAFAH1B3Q15102 231 aaKnown RBP23.17■■□□□ 1.3
TDP1-206ENST00000553569 SYCP2LQ5T4T6 812 aa23.17■■□□□ 1.3
TDP1-206ENST00000553569 NCEH1Q6PIU2 408 aa23.17■■□□□ 1.3
TDP1-206ENST00000553569 LRRC8AQ8IWT6 810 aa23.17■■□□□ 1.3
TDP1-206ENST00000553569 PLPP6Q8IY26 295 aa23.17■■□□□ 1.3
TDP1-206ENST00000553569 CADM4Q8NFZ8 388 aa23.17■■□□□ 1.3
TDP1-206ENST00000553569 CALR3Q96L12 384 aaKnown RBP23.17■■□□□ 1.3
TDP1-206ENST00000553569 EVLQ9UI08 416 aaPredicted RBP23.17■■□□□ 1.3
TDP1-206ENST00000553569 GON4LQ3T8J9 2241 aa23.17■■□□□ 1.3
TDP1-206ENST00000553569 GRID2IPA4D2P6 1211 aa23.16■■□□□ 1.3
TDP1-206ENST00000553569 FSBPO95073 299 aa23.16■■□□□ 1.3
TDP1-206ENST00000553569 MAOBP27338 520 aa23.16■■□□□ 1.3
TDP1-206ENST00000553569 GBE1Q04446 702 aa23.16■■□□□ 1.3
TDP1-206ENST00000553569 SF3A2Q15428 464 aaKnown RBP23.16■■□□□ 1.3
TDP1-206ENST00000553569 MYLK3Q32MK0 819 aa23.16■■□□□ 1.3
TDP1-206ENST00000553569 TMCO4Q5TGY1 634 aa23.16■■□□□ 1.3
TDP1-206ENST00000553569 AGBL4Q5VU57 503 aa23.16■■□□□ 1.3
TDP1-206ENST00000553569 TCEAL6Q6IPX3 200 aa23.16■■□□□ 1.3
TDP1-206ENST00000553569 MFSD7Q6UXD7 560 aa23.16■■□□□ 1.3
TDP1-206ENST00000553569 RFX6Q8HWS3 928 aa23.16■■□□□ 1.3
TDP1-206ENST00000553569 SYT12Q8IV01 421 aa23.16■■□□□ 1.3
TDP1-206ENST00000553569 KRT35Q92764 455 aa23.16■■□□□ 1.3
TDP1-206ENST00000553569 TCEAL3Q969E4 200 aa23.16■■□□□ 1.3
TDP1-206ENST00000553569 PPP1R16AQ96I34 528 aa23.16■■□□□ 1.3
TDP1-206ENST00000553569 MAK16Q9BXY0 300 aaKnown RBP23.16■■□□□ 1.3
TDP1-206ENST00000553569 TMEM74BQ9NUR3 256 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms