RNA–Protein interactions for RNA: ENST00000553474.5

SHMT2-205, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2 BASIC

Gene SHMT2, Length 1,765 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-205ENST00000553474 IARS2Q9NSE4 1012 aaKnown RBP13.11□□□□□ -0.31
SHMT2-205ENST00000553474 PADI3Q9ULW8 664 aa13.11□□□□□ -0.31
SHMT2-205ENST00000553474 MAP3K7O43318 606 aa13.1□□□□□ -0.31
SHMT2-205ENST00000553474 MAFKO60675 156 aa13.1□□□□□ -0.31
SHMT2-205ENST00000553474 IGFBP6P24592 240 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-205ENST00000553474 CPA2P48052 419 aa13.1□□□□□ -0.31
SHMT2-205ENST00000553474 AFF1P51825 1210 aaKnown RBP13.1□□□□□ -0.31
SHMT2-205ENST00000553474 PRKAA1Q13131 559 aa13.1□□□□□ -0.31
SHMT2-205ENST00000553474 C1orf146Q5VVC0 180 aa13.1□□□□□ -0.31
SHMT2-205ENST00000553474 AFMIDQ63HM1 303 aa13.1□□□□□ -0.31
SHMT2-205ENST00000553474 RWDD4Q6NW29 188 aaKnown RBP13.1□□□□□ -0.31
SHMT2-205ENST00000553474 IRGCQ6NXR0 463 aa13.1□□□□□ -0.31
SHMT2-205ENST00000553474 RIPOR1Q6ZS17 1223 aa13.1□□□□□ -0.31
SHMT2-205ENST00000553474 MAVSQ7Z434 540 aa13.1□□□□□ -0.31
SHMT2-205ENST00000553474 SPATA2LQ8IUW3 424 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-205ENST00000553474 ARHGAP12Q8IWW6 846 aa13.1□□□□□ -0.31
SHMT2-205ENST00000553474 KIRREL3Q8IZU9 778 aa13.1□□□□□ -0.31
SHMT2-205ENST00000553474 PLD6Q8N2A8 252 aaKnown RBP13.1□□□□□ -0.31
SHMT2-205ENST00000553474 TSEN34Q9BSV6 310 aaKnown RBP13.1□□□□□ -0.31
SHMT2-205ENST00000553474 FAM167BQ9BTA0 163 aa13.1□□□□□ -0.31
SHMT2-205ENST00000553474 ACE2Q9BYF1 805 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-205ENST00000553474 TBC1D13Q9NVG8 400 aa13.1□□□□□ -0.31
SHMT2-205ENST00000553474 PNPOQ9NVS9 261 aa13.1□□□□□ -0.31
SHMT2-205ENST00000553474 IL1RAPL1Q9NZN1 696 aa13.1□□□□□ -0.31
SHMT2-205ENST00000553474 PHF24Q9UPV7 400 aa13.1□□□□□ -0.31
SHMT2-205ENST00000553474 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.1□□□□□ -0.31
SHMT2-205ENST00000553474 MYO16Q9Y6X6 1858 aa13.1□□□□□ -0.31
SHMT2-205ENST00000553474 A0A088AWK7 358 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 GOLGA8QA0A0J9YX86 632 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 GOLGA8OA6NCC3 632 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 GOLGA8NF8WBI6 632 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 TNFRSF10BO14763 440 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 HDAC3O15379 428 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 PAGE1O75459 146 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 DDHD2O94830 711 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 CTSHP09668 335 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 NMBRP28336 390 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 ADRA1AP35348 466 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 PSEN1P49768 467 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 KLC1Q07866 573 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 OLIG2Q13516 323 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 GSTA3Q16772 222 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 KIAA0930Q6ICG6 404 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-205ENST00000553474 RAPH1Q70E73 1250 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 GALNT7Q86SF2 657 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 ARHGAP18Q8N392 663 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 RTL3Q8N8U3 475 aaKnown RBP13.09□□□□□ -0.31
SHMT2-205ENST00000553474 CALML6Q8TD86 181 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 STYXQ8WUJ0 223 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 ABHD8Q96I13 439 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 FUBP3Q96I24 572 aaKnown RBP eCLIP13.09□□□□□ -0.31
SHMT2-205ENST00000553474 PANX3Q96QZ0 392 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 PAAF1Q9BRP4 392 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 C1QTNF1Q9BXJ1 281 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 COG4Q9H9E3 785 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 AGO3Q9H9G7 860 aaKnown RBP13.09□□□□□ -0.31
SHMT2-205ENST00000553474 ARNT2Q9HBZ2 717 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 VPS45Q9NRW7 570 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 CACNG4Q9UBN1 327 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 PCDHB8Q9UN66 801 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 ARHGAP26Q9UNA1 814 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 ACOT9Q9Y305 439 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 PLXNA3P51805 1871 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 A0A087X1B8 175 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 TMEM189-UBE2V1I3L0A0 370 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 DFFAO00273 331 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 MATN2O00339 956 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 SMNDC1O75940 238 aaKnown RBP eCLIP13.09□□□□□ -0.316e-6■□□□□ 8.8
SHMT2-205ENST00000553474 RPL14P50914 215 aaKnown RBP13.09□□□□□ -0.31
SHMT2-205ENST00000553474 NDST2P52849 883 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 SLC5A3P53794 718 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 ATN1P54259 1190 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-205ENST00000553474 RAB10P61026 200 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 YWHAHQ04917 246 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-205ENST00000553474 MTA1Q13330 715 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 ITGA7Q13683 1181 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 USP10Q14694 798 aaKnown RBP13.09□□□□□ -0.31
SHMT2-205ENST00000553474 LBRQ14739 615 aaKnown RBP13.09□□□□□ -0.31
SHMT2-205ENST00000553474 GRM3Q14832 879 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 FAM26DQ5JW98 314 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 PGM2L1Q6PCE3 622 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 CD300LGQ6UXG3 332 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 TNS4Q8IZW8 715 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 SCG3Q8WXD2 468 aaKnown RBP13.09□□□□□ -0.31
SHMT2-205ENST00000553474 CCDC126Q96EE4 140 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 CELF6Q96J87 481 aaKnown RBP13.09□□□□□ -0.31
SHMT2-205ENST00000553474 FCRL2Q96LA5 508 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-205ENST00000553474 ZNF184Q99676 751 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-205ENST00000553474 RTKNQ9BST9 563 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 VCX3BQ9H321 246 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 FBXO44Q9H4M3 255 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 TASP1Q9H6P5 420 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 TCF7L2Q9NQB0 619 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 ZNF358Q9NW07 568 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 NDE1Q9NXR1 346 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 SLC39A10Q9ULF5 831 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 TCAF1Q9Y4C2 921 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 DNAH12Q6ZR08 3092 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 DOCK4Q8N1I0 1966 aa13.09□□□□□ -0.31
SHMT2-205ENST00000553474 KCNU1A8MYU2 1149 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms