RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 DYRK4Q9NR20 520 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 ST7Q9NRC1 585 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 APOBEC3BQ9UH17 382 aaKnown RBP13.2□□□□□ -0.3
VPS29-211ENST00000553128 GGT7Q9UJ14 662 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 VANGL2Q9ULK5 521 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 HS3ST2Q9Y278 367 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 FADS3Q9Y5Q0 445 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 WASF2Q9Y6W5 498 aa13.2□□□□□ -0.3
VPS29-211ENST00000553128 TRPM6Q9BX84 2022 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 SYNJ2BP-COX16A0A087WUM0 186 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 BLACEA4D250 179 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 IGLON5A6NGN9 336 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 LMO7DNF2Z398 122 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 NVLO15381 856 aaKnown RBP13.19□□□□□ -0.3
VPS29-211ENST00000553128 ZNF821O75541 412 aaPredicted RBP13.19□□□□□ -0.3
VPS29-211ENST00000553128 NEFLP07196 543 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 PAEPP09466 180 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 ADRB3P13945 408 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 TSHRP16473 764 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 RPL13P26373 211 aaKnown RBP13.19□□□□□ -0.3
VPS29-211ENST00000553128 RPL34P49207 117 aaKnown RBP13.19□□□□□ -0.3
VPS29-211ENST00000553128 RPIAP49247 311 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 PFN3P60673 137 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 RPS21P63220 83 aaKnown RBP13.19□□□□□ -0.3
VPS29-211ENST00000553128 AUHQ13825 339 aaKnown RBP13.19□□□□□ -0.3
VPS29-211ENST00000553128 DCAF17Q5H9S7 520 aaPredicted RBP13.19□□□□□ -0.3
VPS29-211ENST00000553128 TTC39BQ5VTQ0 682 aaPredicted RBP13.19□□□□□ -0.3
VPS29-211ENST00000553128 TCERG1LQ5VWI1 586 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 DPY19L3Q6ZPD9 716 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 NYAP1Q6ZVC0 841 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 DTX1Q86Y01 620 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 PHACTR4Q8IZ21 702 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 ATP6V0D2Q8N8Y2 350 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 WDR48Q8TAF3 677 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 RNF34Q969K3 372 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 GFM1Q96RP9 751 aaKnown RBP13.19□□□□□ -0.3
VPS29-211ENST00000553128 COX16Q9P0S2 106 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 SIRPGQ9P1W8 387 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 SPASTQ9UBP0 616 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 GULP1Q9UBP9 304 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 IL36AQ9UHA7 158 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 VPS51Q9UID3 782 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 LOXL2Q9Y4K0 774 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 PAXBP1Q9Y5B6 917 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 PCDHB4Q9Y5E5 795 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 SCN8AQ9UQD0 1980 aa13.19□□□□□ -0.3
VPS29-211ENST00000553128 NBASA2RRP1 2371 aa13.18□□□□□ -0.3
VPS29-211ENST00000553128 TEP1Q99973 2627 aaKnown RBP13.18□□□□□ -0.3
VPS29-211ENST00000553128 A0A1B0GVL5 298 aa13.18□□□□□ -0.3
VPS29-211ENST00000553128 C9orf172C9J069 976 aa13.18□□□□□ -0.3
VPS29-211ENST00000553128 FPGTO14772 594 aa13.18□□□□□ -0.3
VPS29-211ENST00000553128 CNTN5O94779 1100 aa13.18□□□□□ -0.3
VPS29-211ENST00000553128 RHOBTB3O94955 611 aa13.18□□□□□ -0.3
VPS29-211ENST00000553128 PRNPP04156 253 aa13.18□□□□□ -0.3
VPS29-211ENST00000553128 RPLP0P05388 317 aaKnown RBP13.18□□□□□ -0.3
VPS29-211ENST00000553128 ANXA6P08133 673 aa13.18□□□□□ -0.3
VPS29-211ENST00000553128 JMJD7P0C870 316 aa13.18□□□□□ -0.3
VPS29-211ENST00000553128 GPD2P43304 727 aa13.18□□□□□ -0.3
VPS29-211ENST00000553128 NEK3P51956 506 aa13.18□□□□□ -0.3
VPS29-211ENST00000553128 YWHAEP62258 255 aaKnown RBP13.18□□□□□ -0.3
VPS29-211ENST00000553128 EIF3IQ13347 325 aaKnown RBP13.18□□□□□ -0.3
VPS29-211ENST00000553128 MORC3Q14149 939 aa13.18□□□□□ -0.3
VPS29-211ENST00000553128 KIAA1161Q6NSJ0 714 aa13.18□□□□□ -0.3
VPS29-211ENST00000553128 BEND5Q7L4P6 421 aa13.18□□□□□ -0.3
VPS29-211ENST00000553128 SMYD4Q8IYR2 804 aaPredicted RBP13.18□□□□□ -0.3
VPS29-211ENST00000553128 GUF1Q8N442 669 aaKnown RBP13.18□□□□□ -0.3
VPS29-211ENST00000553128 JPH3Q8WXH2 748 aaPredicted RBP13.18□□□□□ -0.3
VPS29-211ENST00000553128 GLMNQ92990 594 aa13.18□□□□□ -0.3
VPS29-211ENST00000553128 FEM1CQ96JP0 617 aa13.18□□□□□ -0.3
VPS29-211ENST00000553128 C1QTNF2Q9BXJ5 285 aa13.18□□□□□ -0.3
VPS29-211ENST00000553128 CPEB1Q9BZB8 566 aaKnown RBP13.18□□□□□ -0.3
VPS29-211ENST00000553128 MUC3BQ9H195 1237 aa13.18□□□□□ -0.3
VPS29-211ENST00000553128 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.18□□□□□ -0.3
VPS29-211ENST00000553128 ITM2BQ9Y287 266 aa13.18□□□□□ -0.3
VPS29-211ENST00000553128 TBC1D30Q9Y2I9 924 aa13.18□□□□□ -0.3
VPS29-211ENST00000553128 FARP1Q9Y4F1 1045 aaPredicted RBP13.18□□□□□ -0.3
VPS29-211ENST00000553128 HS3ST4Q9Y661 456 aa13.18□□□□□ -0.3
VPS29-211ENST00000553128 A0A0D9SEW6 157 aa13.17□□□□□ -0.3
VPS29-211ENST00000553128 RIOK3O14730 519 aaKnown RBP13.17□□□□□ -0.3
VPS29-211ENST00000553128 STX10O60499 249 aa13.17□□□□□ -0.3
VPS29-211ENST00000553128 EPB41P11171 864 aaKnown RBP13.17□□□□□ -0.3
VPS29-211ENST00000553128 OXCT1P55809 520 aa13.17□□□□□ -0.3
VPS29-211ENST00000553128 CCDC15Q0P6D6 951 aa13.17□□□□□ -0.3
VPS29-211ENST00000553128 SERINC3Q13530 473 aa13.17□□□□□ -0.3
VPS29-211ENST00000553128 ALFQ53S48 1182 aa13.17□□□□□ -0.3
VPS29-211ENST00000553128 ESRP1Q6NXG1 681 aaKnown RBP13.17□□□□□ -0.3
VPS29-211ENST00000553128 DENND1BQ6P3S1 775 aa13.17□□□□□ -0.3
VPS29-211ENST00000553128 C22orf39Q6P5X5 142 aa13.17□□□□□ -0.3
VPS29-211ENST00000553128 PARS2Q7L3T8 475 aaKnown RBP13.17□□□□□ -0.3
VPS29-211ENST00000553128 PCDH19Q8TAB3 1148 aa13.17□□□□□ -0.3
VPS29-211ENST00000553128 BTN2A2Q8WVV5 523 aa13.17□□□□□ -0.3
VPS29-211ENST00000553128 USP7Q93009 1102 aa13.17□□□□□ -0.3
VPS29-211ENST00000553128 LENG8Q96PV6 779 aaPredicted RBP13.17□□□□□ -0.3
VPS29-211ENST00000553128 STRADBQ9C0K7 418 aa13.17□□□□□ -0.3
VPS29-211ENST00000553128 POPDC2Q9HBU9 364 aa13.17□□□□□ -0.3
VPS29-211ENST00000553128 SEPT10Q9P0V9 454 aa13.17□□□□□ -0.3
VPS29-211ENST00000553128 E5RJQ4 531 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 PFKFB1P16118 471 aa13.16□□□□□ -0.3
VPS29-211ENST00000553128 TBXAS1P24557 533 aaPredicted RBP13.16□□□□□ -0.3
VPS29-211ENST00000553128 ITGB7P26010 798 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms