RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 GRAMD4Q6IC98 578 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 ZFP1Q6P2D0 407 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 MOB2Q70IA6 237 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 ZC3H7AQ8IWR0 971 aaKnown RBP4.92□□□□□ -1.62
LIMA1-214ENST00000552783 RNF168Q8IYW5 571 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-214ENST00000552783 ARL10Q8N8L6 244 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 CXorf38Q8TB03 319 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 ACMSDQ8TDX5 336 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 CERS2Q96G23 380 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 COX4I2Q96KJ9 171 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 KCTD15Q96SI1 283 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-214ENST00000552783 SERPINI1Q99574 410 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 BCO2Q9BYV7 579 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 MINDY3Q9H8M7 445 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 CXorf21Q9HAI6 301 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 NMRAL1Q9HBL8 299 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 LTB4R2Q9NPC1 389 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 OXSMQ9NWU1 459 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 TSPAN16Q9UKR8 245 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 MTF2Q9Y483 593 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-214ENST00000552783 ANK1P16157 1881 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 MED7O43513 233 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 AKAP10O43572 662 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 MFSD11O43934 449 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 PLA2G6O60733 806 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 CILPO75339 1184 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 MT-ND1P03886 318 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 OCM2P0CE71 109 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 OCMP0CE72 109 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-214ENST00000552783 ATP6V1B2P21281 511 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 MATN1P21941 496 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 ADORA2BP29275 332 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 OXTRP30559 389 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 RCVRNP35243 200 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 MAGEA12P43365 314 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 RPL14P50914 215 aaKnown RBP4.92□□□□□ -1.62
LIMA1-214ENST00000552783 BCAP31P51572 246 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 CSE1LP55060 971 aaKnown RBP4.92□□□□□ -1.62
LIMA1-214ENST00000552783 PSME3P61289 254 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 GHRHRQ02643 423 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 TRIM25Q14258 630 aaKnown RBP4.92□□□□□ -1.62
LIMA1-214ENST00000552783 CERCAMQ5T4B2 595 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 ANKRD26P1Q6NSI1 321 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 OLFML1Q6UWY5 402 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 ZBTB49Q6ZSB9 765 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 GPR141Q7Z602 305 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 TTC30AQ86WT1 665 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 MFSD6LQ8IWD5 586 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 CBR4Q8N4T8 237 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 KCTD4Q8WVF5 259 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 APBB2Q92870 758 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 PPWD1Q96BP3 646 aaKnown RBP4.92□□□□□ -1.62
LIMA1-214ENST00000552783 CSPG4P5Q96PW8 444 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 GPATCH1Q9BRR8 931 aaKnown RBP4.92□□□□□ -1.62
LIMA1-214ENST00000552783 ACE2Q9BYF1 805 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-214ENST00000552783 ANKRD60Q9BZ19 345 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 ILKAPQ9H0C8 392 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-214ENST00000552783 OSBPL2Q9H1P3 480 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 CLK4Q9HAZ1 481 aaKnown RBP4.92□□□□□ -1.62
LIMA1-214ENST00000552783 ZFYVE28Q9HCC9 887 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 TBCCD1Q9NVR7 557 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 CCDC167Q9P0B6 97 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 VPS28Q9UK41 221 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 TRIM17Q9Y577 477 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 MRPL42Q9Y6G3 142 aaKnown RBP4.92□□□□□ -1.62
LIMA1-214ENST00000552783 ZCWPW2A0A1B0GU75 182 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 ATP6AP2A0A1C7CYW4 349 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 RNF103O00237 685 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 TRIM24O15164 1050 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 ATP6AP2O75787 350 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 TSPAN8P19075 237 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 MX2P20592 715 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 TGM2P21980 687 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 KCNA5P22460 613 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 GP5P40197 560 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 PTPN9P43378 593 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 NDST1P52848 882 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 GJA9P57773 515 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 C1QTNF8P60827 252 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 RHDQ02161 417 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 GALNT2Q10471 571 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 GRM3Q14832 879 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 ACAP2Q15057 778 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 PLCL1Q15111 1095 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 NEDD8Q15843 81 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 DGKDQ16760 1214 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 PPP1R26Q5T8A7 1209 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-214ENST00000552783 METTL21CQ5VZV1 264 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 HEATR6Q6AI08 1181 aaKnown RBP4.92□□□□□ -1.62
LIMA1-214ENST00000552783 CNSTQ6PJW8 725 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 NT5DC4Q86YG4 428 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 CPSF7Q8N684 471 aaKnown RBP4.92□□□□□ -1.62
LIMA1-214ENST00000552783 KDM1BQ8NB78 822 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 RDM1Q8NG50 284 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 URGCPQ8TCY9 931 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 TRPM4Q8TD43 1214 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 HTR3CQ8WXA8 447 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 KCNN1Q92952 543 aa4.92□□□□□ -1.62
LIMA1-214ENST00000552783 ZNF669Q96BR6 464 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-214ENST00000552783 ASB9Q96DX5 294 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms