RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 BEX3Q00994 111 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 NSUN2Q08J23 767 aaKnown RBP eCLIP7.61□□□□□ -1.19
LIMA1-213ENST00000552720 GALNT2Q10471 571 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 SNAPC2Q13487 334 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 ZNF423Q2M1K9 1284 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 ANO4Q32M45 955 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 C11orf91Q3C1V1 193 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 PAN2Q504Q3 1202 aaKnown RBP7.61□□□□□ -1.19
LIMA1-213ENST00000552720 NOMO2Q5JPE7 1267 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 LIPMQ5VYY2 423 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 TWF2Q6IBS0 349 aaKnown RBP7.61□□□□□ -1.19
LIMA1-213ENST00000552720 RWDD4Q6NW29 188 aaKnown RBP7.61□□□□□ -1.19
LIMA1-213ENST00000552720 ESRP1Q6NXG1 681 aaKnown RBP7.61□□□□□ -1.19
LIMA1-213ENST00000552720 UGT2A3Q6UWM9 527 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 ZYG11AQ6WRX3 759 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 SPATA31D4Q6ZUB0 917 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 GPR142Q7Z601 462 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 MFN1Q8IWA4 741 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 LILRA2Q8N149 483 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 TOP6BLQ8N6T0 577 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 IPMKQ8NFU5 416 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 DPF3Q92784 378 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 NTAN1Q96AB6 310 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 DCUN1D1Q96GG9 259 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 SENP8Q96LD8 212 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 GPR22Q99680 433 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 TINF2Q9BSI4 451 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 IL22Q9GZX6 179 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 WDCPQ9H6R7 721 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 COPS7BQ9H9Q2 264 aaPredicted RBP7.61□□□□□ -1.19
LIMA1-213ENST00000552720 NDFIP2Q9NV92 336 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 UBAP1Q9NZ09 502 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 RNF181Q9P0P0 153 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 TLK1Q9UKI8 766 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 RAP2CQ9Y3L5 183 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 DTNAQ9Y4J8 743 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 TLL2Q9Y6L7 1015 aa7.61□□□□□ -1.19
LIMA1-213ENST00000552720 SMIM35A0A1B0GVV1 85 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 RGSL1A5PLK6 1076 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 TARM1B6A8C7 271 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 C9IYK1 514 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 BTBD19C9JJ37 291 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 CASQ2O14958 399 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-213ENST00000552720 SNUPNO95149 360 aaKnown RBP7.6□□□□□ -1.19
LIMA1-213ENST00000552720 F2P00734 622 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 HNRNPLP14866 589 aaKnown RBP eCLIP7.6□□□□□ -1.19
LIMA1-213ENST00000552720 HDCP19113 662 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 ARNTP27540 789 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 PRDX6P30041 224 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 CHRNA4P43681 627 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 NPY2RP49146 381 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 CSE1LP55060 971 aaKnown RBP7.6□□□□□ -1.19
LIMA1-213ENST00000552720 GJA9P57773 515 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 SCAPQ12770 1279 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 CDH17Q12864 832 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 FLOT2Q14254 428 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 PIGGQ5H8A4 983 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 OGFRL1Q5TC84 451 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-213ENST00000552720 METTL21CQ5VZV1 264 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 LRRC8EQ6NSJ5 796 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 PAOXQ6QHF9 649 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 BNC2Q6ZN30 1099 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-213ENST00000552720 PTAR1Q7Z6K3 402 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-213ENST00000552720 TAC4Q86UU9 113 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 PQLC1Q8N2U9 271 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 KYQ8NBH2 561 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 ICA1LQ8NDH6 482 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 BHLHE22Q8NFJ8 381 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-213ENST00000552720 STYXQ8WUJ0 223 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 TMA16Q96EY4 203 aaKnown RBP7.6□□□□□ -1.19
LIMA1-213ENST00000552720 KLHL32Q96NJ5 620 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 SLC9A7Q96T83 725 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 FAM192AQ9GZU8 254 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 TSPYL2Q9H2G4 693 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-213ENST00000552720 RHOJQ9H4E5 214 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 ZNF385DQ9H6B1 395 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 TNFRSF12AQ9NP84 129 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 MIOSQ9NXC5 875 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 STK39Q9UEW8 545 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 PSMD13Q9UNM6 376 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 TBC1D30Q9Y2I9 924 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 MTF2Q9Y483 593 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-213ENST00000552720 NLRC5Q86WI3 1866 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 C15orf38-AP3S2A0A0A6YYH1 394 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 MBLAC1A4D2B0 266 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-213ENST00000552720 RRN3P2A6NIE6 340 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 HHLA1C9JL84 531 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 KIF3CO14782 793 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 XPOTO43592 962 aaKnown RBP7.6□□□□□ -1.19
LIMA1-213ENST00000552720 SMIM18P0DKX4 95 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 THRAP10827 490 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 PGFP49763 221 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 CYLC2Q14093 348 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-213ENST00000552720 GRM2Q14416 872 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 MFSD10Q14728 455 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 ZNF789Q5FWF6 425 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 GK5Q6ZS86 529 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 PDZD4Q76G19 769 aaPredicted RBP7.6□□□□□ -1.19
LIMA1-213ENST00000552720 ARPINQ7Z6K5 226 aa7.6□□□□□ -1.19
LIMA1-213ENST00000552720 SDCCAG8Q86SQ7 713 aaPredicted RBP7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms