RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 EFL1Q7Z2Z2 1120 aaKnown RBP16.48■□□□□ 0.23
CUX1-213ENST00000549414 GLOD4Q9HC38 313 aa16.48■□□□□ 0.23
CUX1-213ENST00000549414 STYXL1Q9Y6J8 313 aa16.48■□□□□ 0.23
CUX1-213ENST00000549414 MRASO14807 208 aa16.48■□□□□ 0.23
CUX1-213ENST00000549414 DUSP11O75319 330 aaKnown RBP16.48■□□□□ 0.23
CUX1-213ENST00000549414 FKBP6O75344 327 aa16.48■□□□□ 0.23
CUX1-213ENST00000549414 CSH1P0DML2 217 aa16.48■□□□□ 0.23
CUX1-213ENST00000549414 CSH2P0DML3 217 aa16.48■□□□□ 0.23
CUX1-213ENST00000549414 OR1D2P34982 312 aa16.48■□□□□ 0.23
CUX1-213ENST00000549414 CDCA2Q69YH5 1023 aaPredicted RBP16.48■□□□□ 0.23
CUX1-213ENST00000549414 MPP5Q8N3R9 675 aa16.48■□□□□ 0.23
CUX1-213ENST00000549414 MRGBPQ9NV56 204 aa16.48■□□□□ 0.23
CUX1-213ENST00000549414 GMIPQ9P107 970 aa16.48■□□□□ 0.23
CUX1-213ENST00000549414 CACNA1SQ13698 1873 aa16.48■□□□□ 0.23
CUX1-213ENST00000549414 SF3B1O75533 1304 aaKnown RBP eCLIP16.48■□□□□ 0.234e-6■■■■■ 58.5
CUX1-213ENST00000549414 ARHGAP10A1A4S6 786 aa16.48■□□□□ 0.23
CUX1-213ENST00000549414 DAOAP59103 153 aa16.48■□□□□ 0.23
CUX1-213ENST00000549414 VWA5B1Q5TIE3 1220 aa16.48■□□□□ 0.23
CUX1-213ENST00000549414 HAPLN2Q9GZV7 340 aa16.48■□□□□ 0.23
CUX1-213ENST00000549414 TMEM51Q9NW97 253 aa16.48■□□□□ 0.23
CUX1-213ENST00000549414 TIAM2Q8IVF5 1701 aa16.48■□□□□ 0.23
CUX1-213ENST00000549414 SH3BGRLO75368 114 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 PSMG1O95456 288 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 TPSB2P20231 275 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 MZF1P28698 734 aaPredicted RBP16.47■□□□□ 0.23
CUX1-213ENST00000549414 GTF2H3Q13889 308 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 TPSAB1Q15661 275 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 HFE2Q6ZVN8 426 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 ACMSDQ8TDX5 336 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 TRMT13Q9NUP7 481 aaKnown RBP16.47■□□□□ 0.23
CUX1-213ENST00000549414 ZMYM5Q9UJ78 669 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 SAC3D1A6NKF1 404 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 H0YGN5 161 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 ZNF23P17027 643 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 L1CAMP32004 1257 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 GABRB2P47870 512 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 BOP1Q14137 746 aaKnown RBP16.47■□□□□ 0.23
CUX1-213ENST00000549414 ATP6AP1LQ52LC2 224 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 TIGD5Q53EQ6 642 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 MON1AQ86VX9 555 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 PTGR2Q8N8N7 351 aaPredicted RBP16.47■□□□□ 0.23
CUX1-213ENST00000549414 METTL6Q8TCB7 284 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 SEPHS2Q99611 448 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 PHACTR1Q9C0D0 580 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 XYLT2Q9H1B5 865 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 YY1AP1Q9H869 796 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 CATSPERZQ9NTU4 200 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 SUFUQ9UMX1 484 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 ANKRD6Q9Y2G4 727 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 NFS1Q9Y697 457 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 FGFR1P11362 822 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 RAB10P61026 200 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 CCDC157Q569K6 752 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 HECTD3Q5T447 861 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 OLFML2BQ68BL8 750 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 NIPA2Q8N8Q9 360 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 OR6K2Q8NGY2 324 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 MAGEA13PA6NCF6 341 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 PSMA4P25789 261 aaKnown RBP16.47■□□□□ 0.23
CUX1-213ENST00000549414 SLC25A11Q02978 314 aaKnown RBP16.47■□□□□ 0.23
CUX1-213ENST00000549414 DLG2Q15700 870 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 ARCQ7LC44 396 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 CIR1Q86X95 450 aaPredicted RBP16.47■□□□□ 0.23
CUX1-213ENST00000549414 HERC6Q8IVU3 1022 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 ZNF786Q8N393 782 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 NAT8LQ8N9F0 302 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 FNDC5Q8NAU1 212 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 CLPTM1LQ96KA5 538 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 PPP1R10Q96QC0 940 aaKnown RBP16.47■□□□□ 0.23
CUX1-213ENST00000549414 HERPUD2Q9BSE4 406 aa16.47■□□□□ 0.23
CUX1-213ENST00000549414 MOXD2PA6NHM9 499 aa16.46■□□□□ 0.23
CUX1-213ENST00000549414 LTA4HP09960 611 aaKnown RBP16.46■□□□□ 0.23
CUX1-213ENST00000549414 HSPA1AP0DMV8 641 aaKnown RBP16.46■□□□□ 0.23
CUX1-213ENST00000549414 HSPA1BP0DMV9 641 aaKnown RBP16.46■□□□□ 0.23
CUX1-213ENST00000549414 ZBTB48P10074 688 aaPredicted RBP16.46■□□□□ 0.23
CUX1-213ENST00000549414 PTDSS1P48651 473 aaKnown RBP16.46■□□□□ 0.23
CUX1-213ENST00000549414 INTS6LQ5JSJ4 861 aaKnown RBP16.46■□□□□ 0.23
CUX1-213ENST00000549414 ANKS1BQ7Z6G8 1248 aa16.46■□□□□ 0.23
CUX1-213ENST00000549414 TRPC4APQ8TEL6 797 aa16.46■□□□□ 0.23
CUX1-213ENST00000549414 GDPD5Q8WTR4 605 aa16.46■□□□□ 0.23
CUX1-213ENST00000549414 KLHL4Q9C0H6 718 aa16.46■□□□□ 0.23
CUX1-213ENST00000549414 PRDM16Q9HAZ2 1276 aa16.46■□□□□ 0.23
CUX1-213ENST00000549414 PLK2Q9NYY3 685 aa16.46■□□□□ 0.23
CUX1-213ENST00000549414 DOLKQ9UPQ8 538 aa16.46■□□□□ 0.23
CUX1-213ENST00000549414 NWD2Q9ULI1 1742 aa16.46■□□□□ 0.23
CUX1-213ENST00000549414 SPATA31D3P0C874 917 aa16.46■□□□□ 0.23
CUX1-213ENST00000549414 OASLQ15646 514 aaKnown RBP16.46■□□□□ 0.23
CUX1-213ENST00000549414 PTPRNQ16849 979 aa16.46■□□□□ 0.23
CUX1-213ENST00000549414 SPATA31D4Q6ZUB0 917 aa16.46■□□□□ 0.23
CUX1-213ENST00000549414 MRPL9Q9BYD2 267 aaKnown RBP16.46■□□□□ 0.23
CUX1-213ENST00000549414 MAF1Q9H063 256 aa16.46■□□□□ 0.23
CUX1-213ENST00000549414 SPASTQ9UBP0 616 aa16.46■□□□□ 0.23
CUX1-213ENST00000549414 VTI1BQ9UEU0 232 aa16.46■□□□□ 0.23
CUX1-213ENST00000549414 APPL1Q9UKG1 709 aa16.46■□□□□ 0.23
CUX1-213ENST00000549414 C5orf60A6NFR6 353 aa16.46■□□□□ 0.23
CUX1-213ENST00000549414 SLC2A4P14672 509 aa16.46■□□□□ 0.23
CUX1-213ENST00000549414 ARHGAP17Q68EM7 881 aa16.46■□□□□ 0.23
CUX1-213ENST00000549414 RFWD3Q6PCD5 774 aa16.46■□□□□ 0.23
CUX1-213ENST00000549414 B3GNT9Q6UX72 402 aa16.46■□□□□ 0.23
CUX1-213ENST00000549414 FAM13CQ8NE31 585 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms