RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 WIPF3A6NGB9 483 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 ZNF891A8MT65 544 aaPredicted RBP4.9□□□□□ -1.63
LIMS1-214ENST00000542845 D6RAR5 112 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 STMND1H3BQB6 276 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 TGFBR3LH3BV60 316 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 K7EM74 188 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 KPNA3O00505 521 aaPredicted RBP4.9□□□□□ -1.63
LIMS1-214ENST00000542845 NTN3O00634 580 aaPredicted RBP4.9□□□□□ -1.63
LIMS1-214ENST00000542845 SPTLC2O15270 562 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 YY2O15391 372 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 STX6O43752 255 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 DUX1O43812 170 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 GADD45BO75293 160 aaPredicted RBP4.9□□□□□ -1.63
LIMS1-214ENST00000542845 GCATO75600 419 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 WFS1O76024 890 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 DDAH2O95865 285 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 PAK4O96013 591 aaPredicted RBP4.9□□□□□ -1.63
LIMS1-214ENST00000542845 SRPRAP08240 638 aaKnown RBP4.9□□□□□ -1.63
LIMS1-214ENST00000542845 SLFN14P0C7P3 912 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 GAP43P17677 238 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 CD58P19256 250 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 SLC6A4P31645 630 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 CASP4P49662 377 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 IDH3AP50213 366 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 RPS24P62847 133 aaKnown RBP4.9□□□□□ -1.63
LIMS1-214ENST00000542845 NUCB2P80303 420 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 CDH18Q13634 790 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 FZD2Q14332 565 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 ELAVL3Q14576 367 aaKnown RBP4.9□□□□□ -1.63
LIMS1-214ENST00000542845 TRIP4Q15650 581 aaPredicted RBP4.9□□□□□ -1.63
LIMS1-214ENST00000542845 SNRNP35Q16560 246 aaKnown RBP4.9□□□□□ -1.63
LIMS1-214ENST00000542845 BMT2Q1RMZ1 405 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 LARP7Q4G0J3 582 aaKnown RBP eCLIP4.9□□□□□ -1.63
LIMS1-214ENST00000542845 ZNF394Q53GI3 561 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 ARSJQ5FYB0 599 aaPredicted RBP4.9□□□□□ -1.63
LIMS1-214ENST00000542845 ATP1A1-AS1Q5TC04 95 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 PIK3R6Q5UE93 754 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 AGBL4Q5VU57 503 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 SEL1L3Q68CR1 1132 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 GCNT7Q6ZNI0 430 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 ASB18Q6ZVZ8 466 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 PARGQ86W56 976 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 HORMAD1Q86X24 394 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 DCP2Q8IU60 420 aaKnown RBP4.9□□□□□ -1.63
LIMS1-214ENST00000542845 FAM217AQ8IXS0 508 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 CACNA2D3Q8IZS8 1091 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 CYP4X1Q8N118 509 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 CRYBG2Q8N1P7 616 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 ARHGAP18Q8N392 663 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 GALNT11Q8NCW6 608 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 FIBINQ8TAL6 211 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 APOBEC4Q8WW27 367 aaKnown RBP4.9□□□□□ -1.63
LIMS1-214ENST00000542845 OR8D1Q8WZ84 308 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 BMFQ96LC9 184 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 HEXIM2Q96MH2 286 aaKnown RBP4.9□□□□□ -1.63
LIMS1-214ENST00000542845 FRMD6Q96NE9 622 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 SPAG5Q96R06 1193 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 CMKLR1Q99788 373 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 STRA6Q9BX79 667 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 PANK2Q9BZ23 570 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 XYLT2Q9H1B5 865 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 LRRN3Q9H3W5 708 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 KIAA1586Q9HCI6 787 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 PRDM8Q9NQV8 689 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 DYRK4Q9NR20 520 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 PANK4Q9NVE7 773 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 SPASTQ9UBP0 616 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 APOBEC3BQ9UH17 382 aaKnown RBP4.9□□□□□ -1.63
LIMS1-214ENST00000542845 FOXD3Q9UJU5 478 aaPredicted RBP4.9□□□□□ -1.63
LIMS1-214ENST00000542845 ACSL6Q9UKU0 697 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 CSNK1G3Q9Y6M4 447 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 ITPR2Q14571 2701 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 NBASA2RRP1 2371 aa4.9□□□□□ -1.63
LIMS1-214ENST00000542845 TNRC6AQ8NDV7 1962 aaKnown RBP4.89□□□□□ -1.63
LIMS1-214ENST00000542845 SPTBN1Q01082 2364 aaKnown RBP4.89□□□□□ -1.63
LIMS1-214ENST00000542845 SPTY2D1-AS1A0A0U1RR47 76 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 A0A1W2PQM1 296 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 FAM187AA6NFU0 413 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 C10orf142B7Z368 130 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 C1QTNF3-AMACRE9PGA6 284 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 TPP1O14773 563 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 KIAA0391O15091 583 aaKnown RBP4.89□□□□□ -1.63
LIMS1-214ENST00000542845 ST8SIA5O15466 376 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 SLC7A4O43246 635 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 CCL4P13236 92 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 P4HA1P13674 534 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 PRF1P14222 555 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 NME1P15531 152 aaKnown RBP4.89□□□□□ -1.63
LIMS1-214ENST00000542845 EPB42P16452 691 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 GJB2P29033 226 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 SLC11A2P49281 568 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 ARSDP51689 593 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 TKTL1P51854 596 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 NEK4P51957 841 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 THOP1P52888 689 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 TAS2R38P59533 333 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 ZNF445P59923 1031 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 PRR20EP86478 221 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 PRR20CP86479 221 aa4.89□□□□□ -1.63
LIMS1-214ENST00000542845 PRR20DP86480 221 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms