RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 STIP1P31948 543 aaKnown RBP17.81■□□□□ 0.44
CLSTN3-210ENST00000540931 MMP13P45452 471 aa17.81■□□□□ 0.44
CLSTN3-210ENST00000540931 DNA2P51530 1060 aa17.81■□□□□ 0.44
CLSTN3-210ENST00000540931 GAS6Q14393 721 aa17.81■□□□□ 0.44
CLSTN3-210ENST00000540931 NOMO1Q15155 1222 aa17.81■□□□□ 0.44
CLSTN3-210ENST00000540931 ZNF776Q68DI1 518 aaPredicted RBP17.81■□□□□ 0.44
CLSTN3-210ENST00000540931 HEATR6Q6AI08 1181 aaKnown RBP17.81■□□□□ 0.44
CLSTN3-210ENST00000540931 KBTBD6Q86V97 674 aa17.81■□□□□ 0.44
CLSTN3-210ENST00000540931 SFTPA1Q8IWL2 248 aa17.81■□□□□ 0.44
CLSTN3-210ENST00000540931 HCAR2Q8TDS4 363 aa17.81■□□□□ 0.44
CLSTN3-210ENST00000540931 MAML1Q92585 1016 aa17.81■□□□□ 0.44
CLSTN3-210ENST00000540931 PRCCQ92733 491 aaPredicted RBP17.81■□□□□ 0.44
CLSTN3-210ENST00000540931 PTPRN2Q92932 1015 aa17.81■□□□□ 0.44
CLSTN3-210ENST00000540931 TUBGCP5Q96RT8 1024 aa17.81■□□□□ 0.44
CLSTN3-210ENST00000540931 ACOX2Q99424 681 aa17.81■□□□□ 0.44
CLSTN3-210ENST00000540931 CPEB1Q9BZB8 566 aaKnown RBP17.81■□□□□ 0.44
CLSTN3-210ENST00000540931 PRSS16Q9NQE7 514 aa17.81■□□□□ 0.44
CLSTN3-210ENST00000540931 BCCIPQ9P287 314 aaKnown RBP eCLIP17.81■□□□□ 0.44
CLSTN3-210ENST00000540931 HCN2Q9UL51 889 aa17.81■□□□□ 0.44
CLSTN3-210ENST00000540931 SNX12Q9UMY4 172 aa17.81■□□□□ 0.44
CLSTN3-210ENST00000540931 MFHAS1Q9Y4C4 1052 aa17.81■□□□□ 0.44
CLSTN3-210ENST00000540931 NUP205Q92621 2012 aa17.81■□□□□ 0.44
CLSTN3-210ENST00000540931 VPS13AQ96RL7 3174 aa17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 MYO18AQ92614 2054 aaKnown RBP17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 GOLGA6L10A0A0M3HER8 536 aa17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 A0A1W2PQF6 199 aa17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 TTC34A8MYJ7 566 aa17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 J3KR12 359 aa17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 CEP104O60308 925 aa17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 DNTTP04053 509 aa17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 CCNB1P14635 433 aa17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 CA4P22748 312 aa17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 PRKCHP24723 683 aa17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 CASQ1P31415 396 aa17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 STK19P49842 368 aaPredicted RBP17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 AP1S1P61966 158 aa17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 IFI35P80217 286 aaPredicted RBP17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 LMNB2Q03252 620 aa17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 AP1B1Q10567 949 aa17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 KLF1Q13351 362 aaPredicted RBP17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 ZNF211Q13398 564 aaPredicted RBP17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 C9orf64Q5T6V5 341 aa17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 PAPD7Q5XG87 772 aaKnown RBP17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 LINGO4Q6UY18 593 aa17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 RASSF3Q86WH2 238 aa17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 RASGEF1CQ8N431 466 aa17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 TEX26Q8N6G2 289 aa17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 HEPHQ9BQS7 1158 aa17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 POLR1EQ9GZS1 481 aaKnown RBP17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 RSPH9Q9H1X1 276 aaPredicted RBP17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 FEZ2Q9UHY8 353 aaPredicted RBP17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 TRHDEQ9UKU6 1024 aa17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 TPX2Q9ULW0 747 aaKnown RBP17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 NCKAP1Q9Y2A7 1128 aa17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 SAR1BQ9Y6B6 198 aa17.8■□□□□ 0.44
CLSTN3-210ENST00000540931 TCRBV21S2A2A0A5A6 115 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 WASH3PC4AMC7 463 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 H7C0C1 242 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 PGRMC1O00264 195 aaKnown RBP17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 ENC1O14682 589 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 CD160O95971 181 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 MT-CO1P00395 513 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 C5AR1P21730 350 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 GLDCP23378 1020 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 OXTRP30559 389 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 ATP5OP48047 213 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 SUOXP51687 545 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 SLC10A2Q12908 348 aaPredicted RBP17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 TUBB2AQ13885 445 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 CCNG2Q16589 344 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 LONRF2Q1L5Z9 754 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 SLC45A4Q5BKX6 768 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 DCAF12L1Q5VU92 463 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 DRICH1Q6PGQ1 229 aaPredicted RBP17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 ZC3H14Q6PJT7 736 aaKnown RBP17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 USP30Q70CQ3 517 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 TMPRSS6Q8IU80 811 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 ACTL9Q8TC94 416 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 ACTRT1Q8TDG2 376 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 LRRC45Q96CN5 670 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 SIPA1Q96FS4 1042 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 OSBPL9Q96SU4 736 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 TUBB2BQ9BVA1 445 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 DYRK4Q9NR20 520 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 HECAQ9UBI9 543 aaPredicted RBP17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 IL36AQ9UHA7 158 aa17.79■□□□□ 0.44
CLSTN3-210ENST00000540931 BCLAF3A2AJT9 711 aaKnown RBP17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 SIN3BO75182 1162 aa17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 FGGP02679 453 aa17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 RBP3P10745 1247 aa17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 CHRNA3P32297 505 aa17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 ACTN2P35609 894 aa17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 WASP42768 502 aa17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 PAFAH1B1P43034 410 aa17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 EIF3EP60228 445 aaKnown RBP17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 OTUD4Q01804 1114 aaKnown RBP17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 PRKD1Q15139 912 aaPredicted RBP17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 MYLK3Q32MK0 819 aa17.78■□□□□ 0.44
CLSTN3-210ENST00000540931 USP39Q53GS9 565 aaKnown RBP17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 98.4 ms