RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 DPYSL2Q16555 572 aa14.46□□□□□ -0.09
USP28-209ENST00000540925 SLC18A3Q16572 532 aa14.46□□□□□ -0.09
USP28-209ENST00000540925 INO80DQ53TQ3 878 aaPredicted RBP14.46□□□□□ -0.09
USP28-209ENST00000540925 CARD16Q5EG05 197 aa14.46□□□□□ -0.09
USP28-209ENST00000540925 CCDC122Q5T0U0 273 aa14.46□□□□□ -0.09
USP28-209ENST00000540925 TRIM69Q86WT6 500 aa14.46□□□□□ -0.09
USP28-209ENST00000540925 ARHGAP12Q8IWW6 846 aa14.46□□□□□ -0.09
USP28-209ENST00000540925 OR14C36Q8NHC7 312 aa14.46□□□□□ -0.09
USP28-209ENST00000540925 SNX19Q92543 992 aa14.46□□□□□ -0.09
USP28-209ENST00000540925 HDAC8Q9BY41 377 aa14.46□□□□□ -0.09
USP28-209ENST00000540925 DHX35Q9H5Z1 703 aaKnown RBP14.46□□□□□ -0.09
USP28-209ENST00000540925 PDFQ9HBH1 243 aa14.46□□□□□ -0.09
USP28-209ENST00000540925 ABHD10Q9NUJ1 306 aa14.46□□□□□ -0.09
USP28-209ENST00000540925 IL36AQ9UHA7 158 aa14.46□□□□□ -0.09
USP28-209ENST00000540925 KNL1Q8NG31 2342 aa14.46□□□□□ -0.1
USP28-209ENST00000540925 A0A1B0GVT2 93 aa14.45□□□□□ -0.1
USP28-209ENST00000540925 A0A1W2PR77 199 aa14.45□□□□□ -0.1
USP28-209ENST00000540925 FAM47DPA6NHR8 397 aa14.45□□□□□ -0.1
USP28-209ENST00000540925 EEF2KO00418 725 aaKnown RBP14.45□□□□□ -0.1
USP28-209ENST00000540925 WNT9AO14904 365 aa14.45□□□□□ -0.1
USP28-209ENST00000540925 BNIP3LO60238 219 aa14.45□□□□□ -0.1
USP28-209ENST00000540925 ADRB1P08588 477 aa14.45□□□□□ -0.1
USP28-209ENST00000540925 ZNF883P0CG24 379 aa14.45□□□□□ -0.1
USP28-209ENST00000540925 CSNK1EP49674 416 aaKnown RBP14.45□□□□□ -0.1
USP28-209ENST00000540925 CCNHP51946 323 aaPredicted RBP14.45□□□□□ -0.1
USP28-209ENST00000540925 NDST2P52849 883 aa14.45□□□□□ -0.1
USP28-209ENST00000540925 SLC14A1Q13336 389 aa14.45□□□□□ -0.1
USP28-209ENST00000540925 PIGHQ14442 188 aaPredicted RBP14.45□□□□□ -0.1
USP28-209ENST00000540925 POM121L1PQ3SYA9 428 aa14.45□□□□□ -0.1
USP28-209ENST00000540925 ARSIQ5FYB1 569 aa14.45□□□□□ -0.1
USP28-209ENST00000540925 KCNT1Q5JUK3 1230 aa14.45□□□□□ -0.1
USP28-209ENST00000540925 TXNRD3NBQ6F5E7 133 aa14.45□□□□□ -0.1
USP28-209ENST00000540925 RFX8Q6ZV50 586 aa14.45□□□□□ -0.1
USP28-209ENST00000540925 FAM71BQ8TC56 605 aa14.45□□□□□ -0.1
USP28-209ENST00000540925 TEKT4Q8WW24 435 aa14.45□□□□□ -0.1
USP28-209ENST00000540925 CASKIN2Q8WXE0 1202 aa14.45□□□□□ -0.1
USP28-209ENST00000540925 BTBD6Q96KE9 485 aa14.45□□□□□ -0.1
USP28-209ENST00000540925 HEPHQ9BQS7 1158 aa14.45□□□□□ -0.1
USP28-209ENST00000540925 NUP85Q9BW27 656 aa14.45□□□□□ -0.1
USP28-209ENST00000540925 GTPBP2Q9BX10 602 aaKnown RBP14.45□□□□□ -0.1
USP28-209ENST00000540925 PREBQ9HCU5 417 aa14.45□□□□□ -0.1
USP28-209ENST00000540925 CWC15Q9P013 229 aaKnown RBP14.45□□□□□ -0.1
USP28-209ENST00000540925 HPCAL4Q9UM19 191 aa14.45□□□□□ -0.1
USP28-209ENST00000540925 FARP1Q9Y4F1 1045 aaPredicted RBP14.45□□□□□ -0.1
USP28-209ENST00000540925 USP24Q9UPU5 2620 aa14.45□□□□□ -0.1
USP28-209ENST00000540925 BAHCC1Q9P281 2608 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 KPNA3O00505 521 aaPredicted RBP14.44□□□□□ -0.1
USP28-209ENST00000540925 GIPC1O14908 333 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 VILLO15195 856 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 OPHN1O60890 802 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 TMCC1O94876 653 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 WNT1P04628 370 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 CEACAM1P13688 526 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 ITGB7P26010 798 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 CTSKP43235 329 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 KIF19Q2TAC6 998 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 HLA-BQ31612 363 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 UAP1L1Q3KQV9 507 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 BOLA3Q53S33 107 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 LEKR1Q6ZMV7 388 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 DBX2Q6ZNG2 339 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 ERN2Q76MJ5 926 aaKnown RBP14.44□□□□□ -0.1
USP28-209ENST00000540925 POLNQ7Z5Q5 900 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 NPWQ8N729 165 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 OR2AP1Q8NGE2 309 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 GRIN3AQ8TCU5 1115 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 TSC1Q92574 1164 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 LRIG1Q96JA1 1093 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 SLC6A18Q96N87 628 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 PACSIN1Q9BY11 444 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 TM6SF2Q9BZW4 377 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 SLC39A8Q9C0K1 460 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 IL21RQ9HBE5 538 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 DONSONQ9NYP3 566 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 HECAQ9UBI9 543 aaPredicted RBP14.44□□□□□ -0.1
USP28-209ENST00000540925 IP6K2Q9UHH9 426 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 ANAPC7Q9UJX3 599 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 ANKRD6Q9Y2G4 727 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 MFHAS1Q9Y4C4 1052 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 PCNX2A6NKB5 2137 aa14.44□□□□□ -0.1
USP28-209ENST00000540925 ASPMQ8IZT6 3477 aa14.43□□□□□ -0.1
USP28-209ENST00000540925 TBC1D3DA0A087WVF3 549 aa14.43□□□□□ -0.1
USP28-209ENST00000540925 TBC1D3IA0A087WXS9 549 aa14.43□□□□□ -0.1
USP28-209ENST00000540925 TBC1D3EA0A087X179 549 aa14.43□□□□□ -0.1
USP28-209ENST00000540925 TBC1D3KA0A087X1G2 549 aa14.43□□□□□ -0.1
USP28-209ENST00000540925 TBC1D3FA6NER0 549 aaPredicted RBP14.43□□□□□ -0.1
USP28-209ENST00000540925 TBC1D3LB9A6J9 549 aa14.43□□□□□ -0.1
USP28-209ENST00000540925 PRAMEF11O60813 436 aa14.43□□□□□ -0.1
USP28-209ENST00000540925 TBC1D3HP0C7X1 549 aa14.43□□□□□ -0.1
USP28-209ENST00000540925 RARAP10276 462 aa14.43□□□□□ -0.1
USP28-209ENST00000540925 ERCC2P18074 760 aa14.43□□□□□ -0.1
USP28-209ENST00000540925 NUDT1P36639 197 aa14.43□□□□□ -0.1
USP28-209ENST00000540925 RECQLP46063 649 aaPredicted RBP14.43□□□□□ -0.1
USP28-209ENST00000540925 ATXN3P54252 364 aaPredicted RBP14.43□□□□□ -0.1
USP28-209ENST00000540925 ADKP55263 362 aaKnown RBP14.43□□□□□ -0.1
USP28-209ENST00000540925 CYTH1Q15438 398 aa14.43□□□□□ -0.1
USP28-209ENST00000540925 ZNF423Q2M1K9 1284 aa14.43□□□□□ -0.1
USP28-209ENST00000540925 N4BP2L1Q5TBK1 243 aaPredicted RBP14.43□□□□□ -0.1
USP28-209ENST00000540925 TBC1D3GQ6DHY5 549 aa14.43□□□□□ -0.1
USP28-209ENST00000540925 TBC1D3CQ6IPX1 549 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms