RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 RWDD2AQ9UIY3 292 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 AJAP1Q9UKB5 411 aaPredicted RBP13.86□□□□□ -0.19
SS18-204ENST00000539244 FADS3Q9Y5Q0 445 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 CSNK1G3Q9Y6M4 447 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 COL6A6A6NMZ7 2263 aa13.86□□□□□ -0.19
SS18-204ENST00000539244 SPTY2D1-AS1A0A0U1RR47 76 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 CAPN8A6NHC0 703 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 CSO75390 466 aaKnown RBP13.85□□□□□ -0.19
SS18-204ENST00000539244 MPOP05164 745 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 ADRB3P13945 408 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 PLA2G2AP14555 144 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 OR1E1P30953 314 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 L1CAMP32004 1257 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 RECQLP46063 649 aaPredicted RBP13.85□□□□□ -0.19
SS18-204ENST00000539244 GABRB2P47870 512 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 SULT1E1P49888 294 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 SERPINH1P50454 418 aaKnown RBP13.85□□□□□ -0.19
SS18-204ENST00000539244 CXADRP78310 365 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 GABREP78334 506 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 DEUP1Q05D60 604 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 FZD2Q14332 565 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 SLC25A52Q3SY17 297 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 RETSATQ6NUM9 610 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 ZCCHC8Q6NZY4 707 aaKnown RBP13.85□□□□□ -0.19
SS18-204ENST00000539244 PTAR1Q7Z6K3 402 aaPredicted RBP13.85□□□□□ -0.19
SS18-204ENST00000539244 TFAP2DQ7Z6R9 452 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 PARGQ86W56 976 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 IRF2BP1Q8IU81 584 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 PLPP6Q8IY26 295 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 FAM71AQ8IYT1 594 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 GRAMD1AQ96CP6 724 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 WBP1Q96G27 269 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 FEM1CQ96JP0 617 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 LENG8Q96PV6 779 aaPredicted RBP13.85□□□□□ -0.19
SS18-204ENST00000539244 HAPLN3Q96S86 360 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 TBCBQ99426 244 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 SLC17A9Q9BYT1 436 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 TNKS2Q9H2K2 1166 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 POLR1BQ9H9Y6 1135 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 ASCL3Q9NQ33 180 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 DNAJC28Q9NX36 388 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 MPP6Q9NZW5 540 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 DNAJC12Q9UKB3 198 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 SSUH2Q9Y2M2 353 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 SNX10Q9Y5X0 201 aa13.85□□□□□ -0.19
SS18-204ENST00000539244 ASH1LQ9NR48 2969 aaKnown RBP13.85□□□□□ -0.19
SS18-204ENST00000539244 CFAP46Q8IYW2 2715 aa13.84□□□□□ -0.19
SS18-204ENST00000539244 FLNBO75369 2602 aaKnown RBP13.84□□□□□ -0.19
SS18-204ENST00000539244 POM121BA6NF01 834 aa13.84□□□□□ -0.19
SS18-204ENST00000539244 FOXN3O00409 490 aaPredicted RBP13.84□□□□□ -0.19
SS18-204ENST00000539244 USP12O75317 370 aa13.84□□□□□ -0.19
SS18-204ENST00000539244 RABIFP47224 123 aa13.84□□□□□ -0.19
SS18-204ENST00000539244 TMPRSS3P57727 454 aa13.84□□□□□ -0.19
SS18-204ENST00000539244 BPIFB4P59827 614 aa13.84□□□□□ -0.19
SS18-204ENST00000539244 RHDQ02161 417 aa13.84□□□□□ -0.19
SS18-204ENST00000539244 TMEM35BQ8NCS4 154 aa13.84□□□□□ -0.19
SS18-204ENST00000539244 ZNF548Q8NEK5 533 aaPredicted RBP13.84□□□□□ -0.19
SS18-204ENST00000539244 OR7D4Q8NG98 312 aa13.84□□□□□ -0.19
SS18-204ENST00000539244 IFI44Q8TCB0 444 aa13.84□□□□□ -0.19
SS18-204ENST00000539244 SNRNP27Q8WVK2 155 aaKnown RBP13.84□□□□□ -0.19
SS18-204ENST00000539244 KLF6Q99612 283 aaPredicted RBP13.84□□□□□ -0.19
SS18-204ENST00000539244 HEPHQ9BQS7 1158 aa13.84□□□□□ -0.19
SS18-204ENST00000539244 PLCB1Q9NQ66 1216 aa13.84□□□□□ -0.19
SS18-204ENST00000539244 NCKIPSDQ9NZQ3 722 aa13.84□□□□□ -0.19
SS18-204ENST00000539244 ZNF462Q96JM2 2506 aa13.84□□□□□ -0.19
SS18-204ENST00000539244 SETXQ7Z333 2677 aaKnown RBP13.83□□□□□ -0.2
SS18-204ENST00000539244 H3BM21 787 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 TPP1O14773 563 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 RAD51BO15315 384 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 NEBLO76041 1014 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 CD160O95971 181 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 PAK4O96013 591 aaPredicted RBP13.83□□□□□ -0.2
SS18-204ENST00000539244 MYF5P13349 255 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 CCNHP51946 323 aaPredicted RBP13.83□□□□□ -0.2
SS18-204ENST00000539244 RNASE9P60153 205 aaKnown RBP13.83□□□□□ -0.2
SS18-204ENST00000539244 ARF5P84085 180 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 SKOR1P84550 965 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 CFHR1Q03591 330 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 ISXQ2M1V0 245 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 ZNF542PQ5EBM4 170 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 CARD16Q5EG05 197 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 BROXQ5VW32 411 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 DPY19L2P1Q6NXN4 242 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 ARCQ7LC44 396 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 ZNF605Q86T29 641 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 XYLT1Q86Y38 959 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 DENND6BQ8NEG7 585 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 ASB12Q8WXK4 309 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 RAB7BQ96AH8 199 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 ISG20Q96AZ6 181 aaKnown RBP13.83□□□□□ -0.2
SS18-204ENST00000539244 C18orf8Q96DM3 657 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 C1QTNF2Q9BXJ5 285 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 DPH1Q9BZG8 443 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 ZYG11BQ9C0D3 744 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 ABCG4Q9H172 646 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 TMPRSS4Q9NRS4 437 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 THSD1Q9NS62 852 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 PPARGC1AQ9UBK2 798 aaKnown RBP13.83□□□□□ -0.2
SS18-204ENST00000539244 KLF15Q9UIH9 416 aa13.83□□□□□ -0.2
SS18-204ENST00000539244 SALL4Q9UJQ4 1053 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms