RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 BCORQ6W2J9 1755 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 RNASEH2AO75792 299 aaKnown RBP11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 CSPG5O95196 566 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 ERBB2P04626 1255 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 GJB1P08034 283 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 RALBP11234 206 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 IDUAP35475 653 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 BMPR1AP36894 532 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 SLC1A6P48664 564 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 SLC26A2P50443 739 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 GJA9P57773 515 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 GABPAQ06546 454 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 ILF2Q12905 390 aaKnown RBP11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 KLF10Q13118 480 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 PEX6Q13608 980 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 CPNE8Q86YQ8 564 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 SLC44A1Q8WWI5 657 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 CEP170P1Q96L14 293 aa11.03□□□□□ -0.64
CLSTN3-207ENST00000537408 CLUHO75153 1309 aa11.02□□□□□ -0.64
CLSTN3-207ENST00000537408 RNF103-CHMP3A0A140T963 221 aa11.02□□□□□ -0.64
CLSTN3-207ENST00000537408 GOLGA8JA6NMD2 632 aa11.02□□□□□ -0.64
CLSTN3-207ENST00000537408 M0R3G1 203 aa11.02□□□□□ -0.64
CLSTN3-207ENST00000537408 GAS2O43903 313 aaKnown RBP11.02□□□□□ -0.64
CLSTN3-207ENST00000537408 SNNO75324 88 aaPredicted RBP11.02□□□□□ -0.64
CLSTN3-207ENST00000537408 APOA1P02647 267 aa11.02□□□□□ -0.64
CLSTN3-207ENST00000537408 PTPN1P18031 435 aaKnown RBP11.02□□□□□ -0.64
CLSTN3-207ENST00000537408 ETFBP38117 255 aa11.02□□□□□ -0.64
CLSTN3-207ENST00000537408 ZNF132P52740 706 aa11.02□□□□□ -0.64
CLSTN3-207ENST00000537408 PKNOX1P55347 436 aa11.02□□□□□ -0.64
CLSTN3-207ENST00000537408 DGUOKQ16854 277 aa11.02□□□□□ -0.64
CLSTN3-207ENST00000537408 HSF5Q4G112 596 aaPredicted RBP11.02□□□□□ -0.64
CLSTN3-207ENST00000537408 CAMK1DQ8IU85 385 aa11.02□□□□□ -0.64
CLSTN3-207ENST00000537408 PPM1NQ8N819 430 aa11.02□□□□□ -0.64
CLSTN3-207ENST00000537408 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.02□□□□□ -0.64
CLSTN3-207ENST00000537408 USP13Q92995 863 aaPredicted RBP11.02□□□□□ -0.64
CLSTN3-207ENST00000537408 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 LIASO43766 372 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 BANF1O75531 89 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 RPLP2P05387 115 aaKnown RBP11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 PSAPP07602 524 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 SLURP2P0DP57 97 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 CTBSQ01459 385 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 LIN9Q5TKA1 542 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 C17orf99Q6UX52 265 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 FAM109AQ8N4B1 249 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 PACRGLQ8N7B6 248 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 NAA50Q9GZZ1 169 aaKnown RBP11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 C11orf49Q9H6J7 331 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 VPS28Q9UK41 221 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 VPS4AQ9UN37 437 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 UBE4BO95155 1302 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 ISPDA4D126 451 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 ZSCAN5DPP0CG00 497 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 GALNT2Q10471 571 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 CDC20Q12834 499 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 FAM117BQ6P1L5 589 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 LINC00299Q6ZSB3 139 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 DSELQ8IZU8 1212 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 JPH3Q8WXH2 748 aaPredicted RBP11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 CCSER2Q9H7U1 834 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 ADA2Q9NZK5 511 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 MTRRQ9UBK8 725 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 KLQ9UEF7 1012 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 HMGXB4Q9UGU5 601 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 USTQ9Y2C2 406 aa11.02□□□□□ -0.65
CLSTN3-207ENST00000537408 TEX51A0A1B0GUA7 166 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 FAM155AB1AL88 458 aaPredicted RBP11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 ARHGEF9O43307 516 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 KCNH1O95259 989 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 MYF6P23409 242 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 IDH3AP50213 366 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 MMRN1Q13201 1228 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 DLG2Q15700 870 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 C5orf22Q49AR2 442 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 BROXQ5VW32 411 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 AGMOQ6ZNB7 445 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 ZCCHC23Q6ZST2 131 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 OTOP3Q7RTS5 596 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 SLCO6A1Q86UG4 719 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 SNX32Q86XE0 403 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 C7orf61Q8IZ16 206 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 PGAM4Q8N0Y7 254 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 TMEM199Q8N511 208 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 TDRD5Q8NAT2 981 aaKnown RBP11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 SLC7A3Q8WY07 619 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 LRTOMTQ8WZ04 291 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 ZIC5Q96T25 663 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 COMMD8Q9NX08 183 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 IPO11Q9UI26 975 aaKnown RBP11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 CACNA1SQ13698 1873 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 KIF13BQ9NQT8 1826 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 TRIM38O00635 465 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 SEPT4O43236 478 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 AKAP10O43572 662 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 EPN2O95208 641 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 STMN1P16949 149 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 ADSSP30520 456 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 PTP4A2Q12974 167 aa11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 DMP1Q13316 513 aaPredicted RBP11.01□□□□□ -0.65
CLSTN3-207ENST00000537408 FASTKD1Q53R41 847 aaKnown RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms