RNA–Protein interactions for RNA: ENST00000536107.5

YBX3-205, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-205	ENST00000536107	ARHGEF4	Q9NR80	690 aa		4.23	□□□□□ -1.73
YBX3-205	ENST00000536107	TBC1D22B	Q9NU19	505 aa		4.23	□□□□□ -1.73
YBX3-205	ENST00000536107	UCKL1	Q9NWZ5	548 aa		4.23	□□□□□ -1.73
YBX3-205	ENST00000536107	PHTF1	Q9UMS5	762 aa		4.23	□□□□□ -1.73
YBX3-205	ENST00000536107	NOTCH4	Q99466	2003 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	PDZD2	O15018	2839 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	CELSR1	Q9NYQ6	3014 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	KNTC1	P50748	2209 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	PRAMEF25	A6NGN4	478 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107		B2RBV5	119 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	AGRP	O00253	132 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	TBX3	O15119	743 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	TRIM24	O15164	1050 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	HNRNPR	O43390	633 aa	Known RBP	4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	CYTH3	O43739	400 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	DFNA5	O60443	496 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	CS	O75390	466 aa	Known RBP	4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	SOAT2	O75908	522 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	KAT7	O95251	611 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	CLDN1	O95832	211 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	RECK	O95980	971 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	PRF1	P14222	555 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	CKMT2	P17540	419 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	SMARCA1	P28370	1054 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	DUSP3	P51452	185 aa	Predicted RBP	4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	MLLT10	P55197	1068 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	BPIFB4	P59827	614 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	CYP4F2	P78329	520 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	KDSR	Q06136	332 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	LAMTOR4	Q0VGL1	99 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	SLC35G1	Q2M3R5	365 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	GAGE13	Q4V321	117 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	DCAF17	Q5H9S7	520 aa	Predicted RBP	4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	TXNDC8	Q6A555	127 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	MRM1	Q6IN84	353 aa	Known RBP	4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	SLC27A1	Q6PCB7	646 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	LAYN	Q6UX15	382 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	C1QL2	Q7Z5L3	287 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	CXorf67	Q86X51	503 aa	Predicted RBP	4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	SLC34A3	Q8N130	599 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	ARL14	Q8N4G2	192 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	ANKRD53	Q8N9V6	530 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	APPL2	Q8NEU8	664 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	CADM4	Q8NFZ8	388 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	PDCD6IP	Q8WUM4	868 aa	Known RBP	4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	MRPS31	Q92665	395 aa	Known RBP	4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	HPS3	Q969F9	1004 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	GFM2	Q969S9	779 aa	Known RBP	4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	PSMG2	Q969U7	264 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	TMEM143	Q96AN5	459 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	ANAPC16	Q96DE5	110 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	COQ10A	Q96MF6	247 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	ABCG4	Q9H172	646 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	OSBPL2	Q9H1P3	480 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	ADNP	Q9H2P0	1102 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	CD93	Q9NPY3	652 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	ASCL3	Q9NQ33	180 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	SATB2	Q9UPW6	733 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	NFE2L3	Q9Y4A8	694 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	EPN1	Q9Y6I3	576 aa	Predicted RBP	4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	VWA8	A3KMH1	1905 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	CRYBG3	Q68DQ2	2970 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	HIVEP1	P15822	2718 aa		4.22	□□□□□ -1.73
YBX3-205	ENST00000536107	IGKV6-21	A0A0C4DH24	114 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107		A0A1W2PQU0	124 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	C2orf78	A6NCI8	922 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	DNAJC9-AS1	A6NH13	148 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	PTGES	O14684	152 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	SYN3	O14994	580 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	TNFSF15	O95150	251 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	AMY2A	P04746	511 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	PRKCG	P05129	697 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	OR4Q2	P0C623	313 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	CALM1	P0DP23	149 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	CALM2	P0DP24	149 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	CALM3	P0DP25	149 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	AMY2B	P19961	511 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	DDX6	P26196	483 aa	Known RBP eCLIP	4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	OXTR	P30559	389 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	NTSR1	P30989	418 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	OPRD1	P41143	372 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	TNFRSF4	P43489	277 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	PTH2R	P49190	550 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	POLE2	P56282	527 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	RPL10A	P62906	217 aa	Known RBP	4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	ASIC1	P78348	528 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	REST	Q13127	1097 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	MORC3	Q14149	939 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	PCBP1	Q15365	356 aa	Known RBP eCLIP	4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	UGCG	Q16739	394 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	UPP1	Q16831	310 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	MGAT5B	Q3V5L5	792 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	XKR3	Q5GH77	459 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	GLRA4	Q5JXX5	417 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	MANEA	Q5SRI9	462 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	CAPRIN2	Q6IMN6	1127 aa	Known RBP	4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	HEATR3	Q7Z4Q2	680 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	MCEMP1	Q8IX19	187 aa		4.21	□□□□□ -1.74
YBX3-205	ENST00000536107	CHPF	Q8IZ52	775 aa		4.21	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms