RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 CACNA1GO43497 2377 aa15.02□□□□□ -0.01
VPS28-215ENST00000531924 NEMP2A6NFY4 417 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 A6NNZ2 444 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 RAMP2O60895 175 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 ZMPSTE24O75844 475 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 CYP1A1P04798 512 aaPredicted RBP15.01□□□□□ -0.01
VPS28-215ENST00000531924 PLEKP08567 350 aaPredicted RBP15.01□□□□□ -0.01
VPS28-215ENST00000531924 KRT3P12035 628 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 ADRB3P13945 408 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 DESP17661 470 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 CDK11BP21127 795 aaKnown RBP15.01□□□□□ -0.01
VPS28-215ENST00000531924 DGKAP23743 735 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 L1CAMP32004 1257 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 ACVRL1P37023 503 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 ANP32AP39687 249 aaKnown RBP15.01□□□□□ -0.01
VPS28-215ENST00000531924 MAPKAPK2P49137 400 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 KLK7P49862 253 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 ARF5P84085 180 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 E2F1Q01094 437 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 SEMG2Q02383 582 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 CCDC14Q49A88 953 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 SASS6Q6UVJ0 657 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 Q6ZSR6 202 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 STRADAQ7RTN6 431 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 KANSL1Q7Z3B3 1105 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 NEK11Q8NG66 645 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 OR13H1Q8NG92 308 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 GPT2Q8TD30 523 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 TBC1D31Q96DN5 1066 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 SELENOOQ9BVL4 669 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 SLC17A9Q9BYT1 436 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 TM6SF2Q9BZW4 377 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 OSBPL2Q9H1P3 480 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 DNAJC28Q9NX36 388 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 WASF2Q9Y6W5 498 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 NBEAQ8NFP9 2946 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 ITPR1Q14643 2758 aa15.01□□□□□ -0.01
VPS28-215ENST00000531924 C2CD4BA6NLJ0 364 aa15□□□□□ -0.01
VPS28-215ENST00000531924 EIF4E1BA6NMX2 242 aaKnown RBP15□□□□□ -0.01
VPS28-215ENST00000531924 KRIT1O00522 736 aa15□□□□□ -0.01
VPS28-215ENST00000531924 TRIM38O00635 465 aa15□□□□□ -0.01
VPS28-215ENST00000531924 PAK4O96013 591 aaPredicted RBP15□□□□□ -0.01
VPS28-215ENST00000531924 ACP1P24666 158 aa15□□□□□ -0.01
VPS28-215ENST00000531924 PTPN9P43378 593 aa15□□□□□ -0.01
VPS28-215ENST00000531924 SNRPD1P62314 119 aaKnown RBP15□□□□□ -0.01
VPS28-215ENST00000531924 FMO1Q01740 532 aa15□□□□□ -0.01
VPS28-215ENST00000531924 NRG1Q02297 640 aaPredicted RBP15□□□□□ -0.01
VPS28-215ENST00000531924 COL9A2Q14055 689 aaPredicted RBP15□□□□□ -0.01
VPS28-215ENST00000531924 PROX2Q3B8N5 592 aa15□□□□□ -0.01
VPS28-215ENST00000531924 CDKAL1Q5VV42 579 aa15□□□□□ -0.01
VPS28-215ENST00000531924 LRRC69Q6ZNQ3 347 aa15□□□□□ -0.01
VPS28-215ENST00000531924 BNIPLQ7Z465 357 aa15□□□□□ -0.01
VPS28-215ENST00000531924 ZSCAN30Q86W11 494 aa15□□□□□ -0.01
VPS28-215ENST00000531924 SLC25A45Q8N413 288 aa15□□□□□ -0.01
VPS28-215ENST00000531924 OR6K2Q8NGY2 324 aa15□□□□□ -0.01
VPS28-215ENST00000531924 FAM172AQ8WUF8 416 aa15□□□□□ -0.01
VPS28-215ENST00000531924 RAB7BQ96AH8 199 aa15□□□□□ -0.01
VPS28-215ENST00000531924 ISG20Q96AZ6 181 aaKnown RBP15□□□□□ -0.01
VPS28-215ENST00000531924 MAGEH1Q9H213 219 aa15□□□□□ -0.01
VPS28-215ENST00000531924 FANCLQ9NW38 375 aa15□□□□□ -0.01
VPS28-215ENST00000531924 ZNF212Q9UDV6 495 aa15□□□□□ -0.01
VPS28-215ENST00000531924 ZFR2Q9UPR6 939 aaKnown RBP15□□□□□ -0.01
VPS28-215ENST00000531924 CLCA2Q9UQC9 943 aa15□□□□□ -0.01
VPS28-215ENST00000531924 FADS3Q9Y5Q0 445 aa15□□□□□ -0.01
VPS28-215ENST00000531924 HS3ST3A1Q9Y663 406 aa15□□□□□ -0.01
VPS28-215ENST00000531924 COL5A1P20908 1838 aaPredicted RBP15□□□□□ -0.01
VPS28-215ENST00000531924 PTPRBP23467 1997 aa15□□□□□ -0.01
VPS28-215ENST00000531924 PLXNB3Q9ULL4 1909 aa15□□□□□ -0.01
VPS28-215ENST00000531924 NYNRINQ9P2P1 1898 aaKnown RBP14.99□□□□□ -0.01
VPS28-215ENST00000531924 CXorf51AA0A1B0GTR3 108 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 H3BM21 787 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 FPGTO14772 594 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 RRP8O43159 456 aaKnown RBP14.99□□□□□ -0.01
VPS28-215ENST00000531924 TSPAN6O43657 245 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 BUB1O43683 1085 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 AP1G1O43747 822 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 ZNF821O75541 412 aaPredicted RBP14.99□□□□□ -0.01
VPS28-215ENST00000531924 CALB1P05937 261 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 HOXB3P14651 431 aaPredicted RBP14.99□□□□□ -0.01
VPS28-215ENST00000531924 CHRNB2P17787 502 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 GPD1P21695 349 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 JAM2P57087 298 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 HNRNPKP61978 463 aaKnown RBP eCLIP14.99□□□□□ -0.01
VPS28-215ENST00000531924 UBXN1Q04323 297 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 RAD51Q06609 339 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 TMEM259Q4ZIN3 620 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 ZNF542PQ5EBM4 170 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 SCYL2Q6P3W7 929 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 GCNT7Q6ZNI0 430 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 PARS2Q7L3T8 475 aaKnown RBP14.99□□□□□ -0.01
VPS28-215ENST00000531924 TMC6Q7Z403 805 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 ABI3BPQ7Z7G0 1075 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 SLFN11Q7Z7L1 901 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 PLPP6Q8IY26 295 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 OR4C6Q8NH72 309 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 JOSD2Q8TAC2 188 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 ARHGEF2Q92974 986 aaKnown RBP14.99□□□□□ -0.01
VPS28-215ENST00000531924 ARHGEF26Q96DR7 871 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 IFT43Q96FT9 208 aa14.99□□□□□ -0.01
VPS28-215ENST00000531924 GBP4Q96PP9 640 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms