RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 CDH2P19022 906 aaPredicted RBP3.17□□□□□ -1.9
CD44-234ENST00000531873 WT1P19544 449 aaPredicted RBP3.17□□□□□ -1.9
CD44-234ENST00000531873 MAKP20794 623 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 HOXA7P31268 230 aaPredicted RBP3.17□□□□□ -1.9
CD44-234ENST00000531873 UBA7P41226 1012 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 RARRES1P49788 294 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 INHBEP58166 350 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 IFI35P80217 286 aaPredicted RBP3.17□□□□□ -1.9
CD44-234ENST00000531873 CYP4A11Q02928 519 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 EPS8Q12929 822 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 CHAF1BQ13112 559 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 CCDC96Q2M329 555 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 PLK5Q496M5 336 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 C5orf22Q49AR2 442 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 CCDC184Q52MB2 194 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 CC2D1BQ5T0F9 858 aaKnown RBP3.17□□□□□ -1.9
CD44-234ENST00000531873 CFAP58Q5T655 872 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 SERTAD4-AS1Q5TG53 156 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 VWA5B1Q5TIE3 1220 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 HECTD2Q5U5R9 776 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 FAM171A1Q5VUB5 890 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 TMCO3Q6UWJ1 677 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 SERPINA13PQ6UXR4 307 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 AMIGO2Q86SJ2 522 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 TADA2BQ86TJ2 420 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 TRIM74Q86UV6 250 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 TRIM73Q86UV7 250 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.17□□□□□ -1.9
CD44-234ENST00000531873 CCDC105Q8IYK2 499 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 C16orf71Q8IYS4 520 aaPredicted RBP3.17□□□□□ -1.9
CD44-234ENST00000531873 C11orf65Q8NCR3 313 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 DNAAF1Q8NEP3 725 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 ZNF398Q8TD17 642 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 IGFBPL1Q8WX77 278 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 SLC9A6Q92581 669 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 LARP4BQ92615 738 aaKnown RBP3.17□□□□□ -1.9
CD44-234ENST00000531873 ARHGEF2Q92974 986 aaKnown RBP3.17□□□□□ -1.9
CD44-234ENST00000531873 CCDC17Q96LX7 622 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 TIMP4Q99727 224 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 FTOQ9C0B1 505 aaKnown RBP eCLIP3.17□□□□□ -1.9
CD44-234ENST00000531873 ENTPD7Q9NQZ7 604 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 IL17RBQ9NRM6 502 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 GRHL1Q9NZI5 618 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 SH3BP4Q9P0V3 963 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 ABI3Q9P2A4 366 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 NFKBIL1Q9UBC1 381 aaPredicted RBP3.17□□□□□ -1.9
CD44-234ENST00000531873 ZNF70Q9UC06 446 aaPredicted RBP3.17□□□□□ -1.9
CD44-234ENST00000531873 TNFRSF18Q9Y5U5 241 aa3.17□□□□□ -1.9
CD44-234ENST00000531873 CYP2D7A0A087X1C5 515 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 SLC22A23A1A5C7 686 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 FRMD3A2A2Y4 597 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 FAM90A8PA6NJQ4 464 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 POC1B-GALNT4F8VUJ3 575 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 JTBO76095 146 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 HLA-DQA2P01906 255 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 WNT1P04628 370 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 FAM90A13PP0C7W8 464 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 FAM90A24PP0C7X0 464 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 NR2F1P10589 423 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 POU1F1P28069 291 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 PPARGP37231 505 aaPredicted RBP3.16□□□□□ -1.9
CD44-234ENST00000531873 ARSFP54793 590 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 SNX16P57768 344 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 YPEL5P62699 121 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 POU5F1Q01860 360 aaKnown RBP3.16□□□□□ -1.9
CD44-234ENST00000531873 STK4Q13043 487 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 MTA1Q13330 715 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 PKP1Q13835 747 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 PGM5Q15124 567 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 RNPS1Q15287 305 aaKnown RBP3.16□□□□□ -1.9
CD44-234ENST00000531873 PFKFB3Q16875 520 aaPredicted RBP3.16□□□□□ -1.9
CD44-234ENST00000531873 FAM153CQ494X1 144 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 ARMC3Q5W041 872 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 ATG9BQ674R7 924 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 IL20RBQ6UXL0 311 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 PRSS45Q7RTY3 260 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 GRASPQ7Z6J2 395 aaPredicted RBP3.16□□□□□ -1.9
CD44-234ENST00000531873 CHSY1Q86X52 802 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 ARHGAP12Q8IWW6 846 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 ARL14EPQ8N8R7 260 aaPredicted RBP3.16□□□□□ -1.9
CD44-234ENST00000531873 GDPD5Q8WTR4 605 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 HDAC7Q8WUI4 952 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 FAR1Q8WVX9 515 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 NELL1Q92832 810 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 FAM149B1Q96BN6 582 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 CALML4Q96GE6 196 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 ZNF764Q96H86 408 aaPredicted RBP3.16□□□□□ -1.9
CD44-234ENST00000531873 UROC1Q96N76 676 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 TEFMQ96QE5 360 aaKnown RBP3.16□□□□□ -1.9
CD44-234ENST00000531873 MAP7D2Q96T17 732 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 TXLNGYQ9BZA5 131 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 TOR3AQ9H497 397 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 FBRSL1Q9HCM7 1045 aaKnown RBP3.16□□□□□ -1.9
CD44-234ENST00000531873 ZNF304Q9HCX3 659 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 EHD2Q9NZN4 543 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 BCCIPQ9P287 314 aaKnown RBP eCLIP3.16□□□□□ -1.9
CD44-234ENST00000531873 GIMAP2Q9UG22 337 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 FBXO40Q9UH90 709 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 RPS6KA6Q9UK32 745 aa3.16□□□□□ -1.9
CD44-234ENST00000531873 A4GNTQ9UNA3 340 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms