RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 CTC1Q2NKJ3 1217 aa21.35■■□□□ 1.01
VPS28-208ENST00000527797 RETSATQ6NUM9 610 aa21.35■■□□□ 1.01
VPS28-208ENST00000527797 CROCCP2Q86T23 111 aa21.35■■□□□ 1.01
VPS28-208ENST00000527797 PRPF39Q86UA1 669 aaKnown RBP21.35■■□□□ 1.01
VPS28-208ENST00000527797 IGDCC3Q8IVU1 814 aa21.35■■□□□ 1.01
VPS28-208ENST00000527797 APCDD1Q8J025 514 aa21.35■■□□□ 1.01
VPS28-208ENST00000527797 DNAAF3Q8N9W5 541 aa21.35■■□□□ 1.01
VPS28-208ENST00000527797 IPMKQ8NFU5 416 aa21.35■■□□□ 1.01
VPS28-208ENST00000527797 ARRDC2Q8TBH0 407 aa21.35■■□□□ 1.01
VPS28-208ENST00000527797 ACDQ96AP0 544 aa21.35■■□□□ 1.01
VPS28-208ENST00000527797 RIPOR3Q96MK2 946 aa21.35■■□□□ 1.01
VPS28-208ENST00000527797 PSKH2Q96QS6 385 aa21.35■■□□□ 1.01
VPS28-208ENST00000527797 EBNA1BP2Q99848 306 aaKnown RBP21.35■■□□□ 1.01
VPS28-208ENST00000527797 TBL1YQ9BQ87 522 aa21.35■■□□□ 1.01
VPS28-208ENST00000527797 ZC3H7BQ9UGR2 993 aaKnown RBP21.35■■□□□ 1.01
VPS28-208ENST00000527797 MAD1L1Q9Y6D9 718 aa21.35■■□□□ 1.01
VPS28-208ENST00000527797 PMPCBO75439 489 aa21.34■■□□□ 1.01
VPS28-208ENST00000527797 SYF2O95926 243 aaKnown RBP21.34■■□□□ 1.01
VPS28-208ENST00000527797 TYRP14679 529 aa21.34■■□□□ 1.01
VPS28-208ENST00000527797 CD70P32970 193 aa21.34■■□□□ 1.01
VPS28-208ENST00000527797 CD86P42081 329 aa21.34■■□□□ 1.01
VPS28-208ENST00000527797 GEMIN4P57678 1058 aaKnown RBP21.34■■□□□ 1.01
VPS28-208ENST00000527797 OLIG2Q13516 323 aa21.34■■□□□ 1.01
VPS28-208ENST00000527797 CYTH1Q15438 398 aa21.34■■□□□ 1.01
VPS28-208ENST00000527797 PLEKHG6Q3KR16 790 aa21.34■■□□□ 1.01
VPS28-208ENST00000527797 INO80DQ53TQ3 878 aaPredicted RBP21.34■■□□□ 1.01
VPS28-208ENST00000527797 LINGO4Q6UY18 593 aa21.34■■□□□ 1.01
VPS28-208ENST00000527797 CAPN12Q6ZSI9 719 aa21.34■■□□□ 1.01
VPS28-208ENST00000527797 C3orf62Q6ZUJ4 267 aa21.34■■□□□ 1.01
VPS28-208ENST00000527797 SEMA3CQ99985 751 aa21.34■■□□□ 1.01
VPS28-208ENST00000527797 MGME1Q9BQP7 344 aa21.34■■□□□ 1.01
VPS28-208ENST00000527797 TMEM109Q9BVC6 243 aa21.34■■□□□ 1.01
VPS28-208ENST00000527797 FSD1LQ9BXM9 530 aa21.34■■□□□ 1.01
VPS28-208ENST00000527797 BFARQ9NZS9 450 aa21.34■■□□□ 1.01
VPS28-208ENST00000527797 OGFRQ9NZT2 677 aa21.34■■□□□ 1.01
VPS28-208ENST00000527797 HEPACAM2A8MVW5 462 aa21.33■■□□□ 1.01
VPS28-208ENST00000527797 MUSKO15146 869 aa21.33■■□□□ 1.01
VPS28-208ENST00000527797 TBX10O75333 385 aa21.33■■□□□ 1.01
VPS28-208ENST00000527797 SPAG6O75602 509 aa21.33■■□□□ 1.01
VPS28-208ENST00000527797 MYZAPP0CAP1 466 aa21.33■■□□□ 1.01
VPS28-208ENST00000527797 POU3F3P20264 500 aaPredicted RBP21.33■■□□□ 1.01
VPS28-208ENST00000527797 MGAT1P26572 445 aa21.33■■□□□ 1.01
VPS28-208ENST00000527797 SSTR1P30872 391 aa21.33■■□□□ 1.01
VPS28-208ENST00000527797 NPY2RP49146 381 aa21.33■■□□□ 1.01
VPS28-208ENST00000527797 DLX2Q07687 328 aaPredicted RBP21.33■■□□□ 1.01
VPS28-208ENST00000527797 CDH17Q12864 832 aa21.33■■□□□ 1.01
VPS28-208ENST00000527797 STAT4Q14765 748 aa21.33■■□□□ 1.01
VPS28-208ENST00000527797 DHCR24Q15392 516 aa21.33■■□□□ 1.01
VPS28-208ENST00000527797 KDELC1Q6UW63 502 aa21.33■■□□□ 1.01
VPS28-208ENST00000527797 KRT222Q8N1A0 295 aa21.33■■□□□ 1.01
VPS28-208ENST00000527797 STAMBPL1Q96FJ0 436 aa21.33■■□□□ 1.01
VPS28-208ENST00000527797 PKNOX2Q96KN3 472 aa21.33■■□□□ 1.01
VPS28-208ENST00000527797 LMLNQ96KR4 655 aa21.33■■□□□ 1.01
VPS28-208ENST00000527797 MRGPRX2Q96LB1 330 aa21.33■■□□□ 1.01
VPS28-208ENST00000527797 APOL2Q9BQE5 337 aa21.33■■□□□ 1.01
VPS28-208ENST00000527797 FICDQ9BVA6 458 aa21.33■■□□□ 1.01
VPS28-208ENST00000527797 ROPN1BQ9BZX4 212 aaPredicted RBP21.33■■□□□ 1.01
VPS28-208ENST00000527797 ROPN1Q9HAT0 212 aaPredicted RBP21.33■■□□□ 1.01
VPS28-208ENST00000527797 ZFP14Q9HCL3 533 aa21.33■■□□□ 1.01
VPS28-208ENST00000527797 ABCB8Q9NUT2 735 aa21.33■■□□□ 1.01
VPS28-208ENST00000527797 PIH1D1Q9NWS0 290 aaKnown RBP21.33■■□□□ 1.01
VPS28-208ENST00000527797 THG1LQ9NWX6 298 aaKnown RBP21.33■■□□□ 1.01
VPS28-208ENST00000527797 H3BQF6 201 aa21.33■■□□□ 1
VPS28-208ENST00000527797 CD160O95971 181 aa21.33■■□□□ 1
VPS28-208ENST00000527797 AGTP01019 485 aa21.33■■□□□ 1
VPS28-208ENST00000527797 MMP2P08253 660 aa21.33■■□□□ 1
VPS28-208ENST00000527797 GSTA2P09210 222 aa21.33■■□□□ 1
VPS28-208ENST00000527797 CES1P23141 567 aa21.33■■□□□ 1
VPS28-208ENST00000527797 ADRA1AP35348 466 aa21.33■■□□□ 1
VPS28-208ENST00000527797 WNT3AP56704 352 aa21.33■■□□□ 1
VPS28-208ENST00000527797 EML3Q32P44 896 aa21.33■■□□□ 1
VPS28-208ENST00000527797 KRT71Q3SY84 523 aa21.33■■□□□ 1
VPS28-208ENST00000527797 ALG1LQ6GMV1 187 aa21.33■■□□□ 1
VPS28-208ENST00000527797 CCNJLQ8IV13 435 aa21.33■■□□□ 1
VPS28-208ENST00000527797 MPP5Q8N3R9 675 aa21.33■■□□□ 1
VPS28-208ENST00000527797 E2F7Q96AV8 911 aa21.33■■□□□ 1
VPS28-208ENST00000527797 TADA1Q96BN2 335 aa21.33■■□□□ 1
VPS28-208ENST00000527797 CFAP36Q96G28 342 aa21.33■■□□□ 1
VPS28-208ENST00000527797 SLC2A11Q9BYW1 496 aa21.33■■□□□ 1
VPS28-208ENST00000527797 COLQQ9Y215 455 aaPredicted RBP21.33■■□□□ 1
VPS28-208ENST00000527797 TTC24A2A3L6 582 aaPredicted RBP21.32■■□□□ 1
VPS28-208ENST00000527797 GOLGA8KD6RF30 607 aa21.32■■□□□ 1
VPS28-208ENST00000527797 TMCC1O94876 653 aa21.32■■□□□ 1
VPS28-208ENST00000527797 IGFBP4P22692 258 aa21.32■■□□□ 1
VPS28-208ENST00000527797 HLA-FP30511 346 aa21.32■■□□□ 1
VPS28-208ENST00000527797 MTHFRP42898 656 aa21.32■■□□□ 1
VPS28-208ENST00000527797 SKOR1P84550 965 aa21.32■■□□□ 1
VPS28-208ENST00000527797 PCSK7Q16549 785 aa21.32■■□□□ 1
VPS28-208ENST00000527797 PITRM1Q5JRX3 1037 aa21.32■■□□□ 1
VPS28-208ENST00000527797 CASC4Q6P4E1 433 aa21.32■■□□□ 1
VPS28-208ENST00000527797 NAT9Q9BTE0 207 aa21.32■■□□□ 1
VPS28-208ENST00000527797 TMBIM4Q9HC24 238 aa21.32■■□□□ 1
VPS28-208ENST00000527797 INTS6Q9UL03 887 aaKnown RBP21.32■■□□□ 1
VPS28-208ENST00000527797 CXorf51AA0A1B0GTR3 108 aa21.31■■□□□ 1
VPS28-208ENST00000527797 RASGRF2O14827 1237 aa21.31■■□□□ 1
VPS28-208ENST00000527797 ADH1CP00326 375 aa21.31■■□□□ 1
VPS28-208ENST00000527797 CYP17A1P05093 508 aa21.31■■□□□ 1
VPS28-208ENST00000527797 IVLP07476 585 aa21.31■■□□□ 1
VPS28-208ENST00000527797 FCARP24071 287 aa21.31■■□□□ 1
VPS28-208ENST00000527797 SLC20A2Q08357 652 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms