RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 HS3ST4Q9Y661 456 aa15.07■□□□□ 0
NUP54-217ENST00000514987 MYO16Q9Y6X6 1858 aa15.06■□□□□ 0
NUP54-217ENST00000514987 H0Y3Z8 333 aa15.06■□□□□ 0
NUP54-217ENST00000514987 SLC22A2O15244 555 aa15.06■□□□□ 0
NUP54-217ENST00000514987 MSI1O43347 362 aaKnown RBP15.06■□□□□ 0
NUP54-217ENST00000514987 MT-CYBP00156 380 aaPredicted RBP15.06■□□□□ 0
NUP54-217ENST00000514987 HLA-DQB2P05538 268 aa15.06■□□□□ 0
NUP54-217ENST00000514987 ATP6V1C1P21283 382 aa15.06■□□□□ 0
NUP54-217ENST00000514987 CPA2P48052 419 aa15.06■□□□□ 0
NUP54-217ENST00000514987 ARCN1P48444 511 aaKnown RBP15.06■□□□□ 0
NUP54-217ENST00000514987 PSEN1P49768 467 aa15.06■□□□□ 0
NUP54-217ENST00000514987 PAPOLAP51003 745 aaKnown RBP15.06■□□□□ 0
NUP54-217ENST00000514987 TBX4P57082 545 aa15.06■□□□□ 0
NUP54-217ENST00000514987 RAB10P61026 200 aa15.06■□□□□ 0
NUP54-217ENST00000514987 PRKAA1Q13131 559 aa15.06■□□□□ 0
NUP54-217ENST00000514987 UBAP2LQ14157 1087 aaKnown RBP15.06■□□□□ 0
NUP54-217ENST00000514987 MAVSQ7Z434 540 aa15.06■□□□□ 0
NUP54-217ENST00000514987 ULK2Q8IYT8 1036 aa15.06■□□□□ 0
NUP54-217ENST00000514987 PPFIBP2Q8ND30 876 aa15.06■□□□□ 0
NUP54-217ENST00000514987 STYXQ8WUJ0 223 aa15.06■□□□□ 0
NUP54-217ENST00000514987 PDCD6IPQ8WUM4 868 aaKnown RBP15.06■□□□□ 0
NUP54-217ENST00000514987 FAM193BQ96PV7 902 aaPredicted RBP15.06■□□□□ 0
NUP54-217ENST00000514987 C1QTNF1Q9BXJ1 281 aa15.06■□□□□ 0
NUP54-217ENST00000514987 ZYG11BQ9C0D3 744 aa15.06■□□□□ 0
NUP54-217ENST00000514987 TRPV6Q9H1D0 765 aa15.06■□□□□ 0
NUP54-217ENST00000514987 NMUR1Q9HB89 426 aa15.06■□□□□ 0
NUP54-217ENST00000514987 OSER1Q9NX31 292 aa15.06■□□□□ 0
NUP54-217ENST00000514987 ABI2Q9NYB9 513 aaPredicted RBP15.06■□□□□ 0
NUP54-217ENST00000514987 CLIC5Q9NZA1 410 aa15.06■□□□□ 0
NUP54-217ENST00000514987 IL37Q9NZH6 218 aa15.06■□□□□ 0
NUP54-217ENST00000514987 CAMSAP3Q9P1Y5 1249 aaPredicted RBP15.06■□□□□ 0
NUP54-217ENST00000514987 TLL2Q9Y6L7 1015 aa15.06■□□□□ 0
NUP54-217ENST00000514987 FRMPD3Q5JV73 1810 aa15.06■□□□□ 0
NUP54-217ENST00000514987 HEATR9A2RTY3 570 aa15.05■□□□□ -0
NUP54-217ENST00000514987 OR6C75A6NL08 312 aa15.05■□□□□ -0
NUP54-217ENST00000514987 FKBP6O75344 327 aa15.05■□□□□ -0
NUP54-217ENST00000514987 RTN3O95197 1032 aaPredicted RBP15.05■□□□□ -0
NUP54-217ENST00000514987 VAPBO95292 243 aa15.05■□□□□ -0
NUP54-217ENST00000514987 PAPSS2O95340 614 aaPredicted RBP15.05■□□□□ -0
NUP54-217ENST00000514987 AHSGP02765 367 aa15.05■□□□□ -0
NUP54-217ENST00000514987 MYCNP04198 464 aaPredicted RBP15.05■□□□□ -0
NUP54-217ENST00000514987 PRKAR2AP13861 404 aaKnown RBP15.05■□□□□ -0
NUP54-217ENST00000514987 ACADSP16219 412 aa15.05■□□□□ -0
NUP54-217ENST00000514987 STMN1P16949 149 aa15.05■□□□□ -0
NUP54-217ENST00000514987 CCND3P30281 292 aaPredicted RBP15.05■□□□□ -0
NUP54-217ENST00000514987 ADSLP30566 484 aaPredicted RBP15.05■□□□□ -0
NUP54-217ENST00000514987 SERPINB5P36952 375 aa15.05■□□□□ -0
NUP54-217ENST00000514987 IRF9Q00978 393 aa15.05■□□□□ -0
NUP54-217ENST00000514987 POU4F1Q01851 419 aa15.05■□□□□ -0
NUP54-217ENST00000514987 PRKCZQ05513 592 aa15.05■□□□□ -0
NUP54-217ENST00000514987 TNK2Q07912 1038 aa15.05■□□□□ -0
NUP54-217ENST00000514987 POU6F1Q14863 301 aa15.05■□□□□ -0
NUP54-217ENST00000514987 DLG2Q15700 870 aa15.05■□□□□ -0
NUP54-217ENST00000514987 SMAD1Q15797 465 aaKnown RBP15.05■□□□□ -0
NUP54-217ENST00000514987 ARTNQ5T4W7 220 aa15.05■□□□□ -0
NUP54-217ENST00000514987 LMNTD2Q8IXW0 634 aa15.05■□□□□ -0
NUP54-217ENST00000514987 COLGALT2Q8IYK4 626 aa15.05■□□□□ -0
NUP54-217ENST00000514987 TDRD5Q8NAT2 981 aaKnown RBP15.05■□□□□ -0
NUP54-217ENST00000514987 C2CD4AQ8NCU7 369 aaPredicted RBP15.05■□□□□ -0
NUP54-217ENST00000514987 DNAJC9Q8WXX5 260 aa15.05■□□□□ -0
NUP54-217ENST00000514987 SCYL1Q96KG9 808 aa15.05■□□□□ -0
NUP54-217ENST00000514987 PGLYRP2Q96PD5 576 aa15.05■□□□□ -0
NUP54-217ENST00000514987 THTPAQ9BU02 230 aa15.05■□□□□ -0
NUP54-217ENST00000514987 GATA5Q9BWX5 397 aaPredicted RBP15.05■□□□□ -0
NUP54-217ENST00000514987 FTHL17Q9BXU8 183 aa15.05■□□□□ -0
NUP54-217ENST00000514987 ARHGAP39Q9C0H5 1083 aa15.05■□□□□ -0
NUP54-217ENST00000514987 NMRK2Q9NPI5 230 aa15.05■□□□□ -0
NUP54-217ENST00000514987 TREX1Q9NSU2 369 aa15.05■□□□□ -0
NUP54-217ENST00000514987 TRMT13Q9NUP7 481 aaKnown RBP15.05■□□□□ -0
NUP54-217ENST00000514987 TMEM248Q9NWD8 314 aa15.05■□□□□ -0
NUP54-217ENST00000514987 MAGED2Q9UNF1 606 aaPredicted RBP15.05■□□□□ -0
NUP54-217ENST00000514987 RUVBL2Q9Y230 463 aaKnown RBP15.05■□□□□ -0
NUP54-217ENST00000514987 HDAC3O15379 428 aa15.04■□□□□ -0
NUP54-217ENST00000514987 NVLO15381 856 aaKnown RBP15.04■□□□□ -0
NUP54-217ENST00000514987 PMPCBO75439 489 aa15.04■□□□□ -0
NUP54-217ENST00000514987 MOCS2O96007 188 aaPredicted RBP15.04■□□□□ -0
NUP54-217ENST00000514987 SLC35E2BP0CK96 405 aa15.04■□□□□ -0
NUP54-217ENST00000514987 CKBP12277 381 aa15.04■□□□□ -0
NUP54-217ENST00000514987 ARRB2P32121 409 aa15.04■□□□□ -0
NUP54-217ENST00000514987 CPOXP36551 454 aa15.04■□□□□ -0
NUP54-217ENST00000514987 CD151P48509 253 aa15.04■□□□□ -0
NUP54-217ENST00000514987 NUMBP49757 651 aa15.04■□□□□ -0
NUP54-217ENST00000514987 ACLYP53396 1101 aa15.04■□□□□ -0
NUP54-217ENST00000514987 SLC12A2P55011 1212 aa15.04■□□□□ -0
NUP54-217ENST00000514987 ACTR3P61158 418 aa15.04■□□□□ -0
NUP54-217ENST00000514987 SMARCB1Q12824 385 aa15.04■□□□□ -0
NUP54-217ENST00000514987 TRIM32Q13049 653 aa15.04■□□□□ -0
NUP54-217ENST00000514987 LAMB3Q13751 1172 aa15.04■□□□□ -0
NUP54-217ENST00000514987 MUM1Q2TAK8 710 aa15.04■□□□□ -0
NUP54-217ENST00000514987 AAGABQ6PD74 315 aa15.04■□□□□ -0
NUP54-217ENST00000514987 GALNT7Q86SF2 657 aa15.04■□□□□ -0
NUP54-217ENST00000514987 WDR60Q8WVS4 1066 aa15.04■□□□□ -0
NUP54-217ENST00000514987 IMP4Q96G21 291 aaKnown RBP15.04■□□□□ -0
NUP54-217ENST00000514987 BTN2A3PQ96KV6 586 aa15.04■□□□□ -0
NUP54-217ENST00000514987 MRGPRX2Q96LB1 330 aa15.04■□□□□ -0
NUP54-217ENST00000514987 CXorf56Q9H5V9 222 aa15.04■□□□□ -0
NUP54-217ENST00000514987 COG4Q9H9E3 785 aa15.04■□□□□ -0
NUP54-217ENST00000514987 PRDM5Q9NQX1 630 aaPredicted RBP15.04■□□□□ -0
NUP54-217ENST00000514987 MRGBPQ9NV56 204 aa15.04■□□□□ -0
NUP54-217ENST00000514987 GEMIN8Q9NWZ8 242 aaKnown RBP15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms