RNA–Protein interactions for RNA: ENST00000513284.5

RNF4-218, Transcript of ring finger protein 4, human

TSL 4

Gene RNF4, Length 517 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-218	ENST00000513284	LRRC61	Q9BV99	259 aa		11.44	□□□□□ -0.58
RNF4-218	ENST00000513284	C1QTNF2	Q9BXJ5	285 aa		11.44	□□□□□ -0.58
RNF4-218	ENST00000513284	HDAC8	Q9BY41	377 aa		11.44	□□□□□ -0.58
RNF4-218	ENST00000513284	SYNDIG1	Q9H7V2	258 aa		11.44	□□□□□ -0.58
RNF4-218	ENST00000513284	LRRC4C	Q9HCJ2	640 aa		11.44	□□□□□ -0.58
RNF4-218	ENST00000513284	SERTAD1	Q9UHV2	236 aa		11.44	□□□□□ -0.58
RNF4-218	ENST00000513284	FADS3	Q9Y5Q0	445 aa		11.44	□□□□□ -0.58
RNF4-218	ENST00000513284	GTF3C3	Q9Y5Q9	886 aa		11.44	□□□□□ -0.58
RNF4-218	ENST00000513284	SPTBN1	Q01082	2364 aa	Known RBP	11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	IGLON5	A6NGN9	336 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	ENO4	A6NNW6	628 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284		D6RAR5	112 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	SNAP91	O60641	907 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	TSHR	P16473	764 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	NR2F2	P24468	414 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	RPL13	P26373	211 aa	Known RBP	11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	RPL34	P49207	117 aa	Known RBP	11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	POLE2	P56282	527 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	RPS21	P63220	83 aa	Known RBP	11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	CENPC	Q03188	943 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	CUL2	Q13617	745 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	CNGA2	Q16280	664 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	NYAP1	Q6ZVC0	841 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	TMPRSS9	Q7Z410	1059 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	SDR16C5	Q8N3Y7	309 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	FBXL13	Q8NEE6	735 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	JPH3	Q8WXH2	748 aa	Predicted RBP	11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	CCDC74A	Q96AQ1	378 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	VOPP1	Q96AW1	172 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	PAGE5	Q96GU1	130 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	BTN2A3P	Q96KV6	586 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	SEPT10	Q9P0V9	454 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	SPAST	Q9UBP0	616 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	GULP1	Q9UBP9	304 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	PLEKHB1	Q9UF11	243 aa	Predicted RBP	11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	IPO11	Q9UI26	975 aa	Known RBP	11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	SLC25A13	Q9UJS0	675 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	RCOR1	Q9UKL0	485 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	HS3ST2	Q9Y278	367 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	LOXL2	Q9Y4K0	774 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	WASF2	Q9Y6W5	498 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	UNC13C	Q8NB66	2214 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	CENPE	Q02224	2701 aa		11.43	□□□□□ -0.58
RNF4-218	ENST00000513284	LRRK1	Q38SD2	2015 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284		A0A1W2PQ27	194 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284		A0A1W2PQ64	194 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284		A0A1W2PQC6	194 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284		F5H5T6	163 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	RPLP0	P05388	317 aa	Known RBP	11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	JMJD7	P0C870	316 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	RRM1	P23921	792 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	PSMC2	P35998	433 aa	Known RBP	11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	KRT85	P78386	507 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	NUCB2	P80303	420 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	DNM1	Q05193	864 aa	Known RBP	11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	CBWD6	Q4V339	395 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	CBWD3	Q5JTY5	395 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	CBWD5	Q5RIA9	395 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	BORA	Q6PGQ7	559 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	PHACTR4	Q8IZ21	702 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	ZSCAN1	Q8NBB4	408 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	KY	Q8NBH2	561 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	BTN2A2	Q8WVV5	523 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	GLMN	Q92990	594 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	MIB2	Q96AX9	1013 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	CENPT	Q96BT3	561 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	FEM1C	Q96JP0	617 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	HSFY1	Q96LI6	401 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	GFM1	Q96RP9	751 aa	Known RBP	11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	STRADB	Q9C0K7	418 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	LRRN3	Q9H3W5	708 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	ZNF71	Q9NQZ8	489 aa	Predicted RBP	11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	APOBEC3B	Q9UH17	382 aa	Known RBP	11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	ANAPC2	Q9UJX6	822 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	KIAA1257	Q9ULG3	409 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	TBC1D30	Q9Y2I9	924 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	COQ4	Q9Y3A0	265 aa		11.42	□□□□□ -0.58
RNF4-218	ENST00000513284	FBN2	P35556	2912 aa		11.41	□□□□□ -0.58
RNF4-218	ENST00000513284	TCAF2	A6NFQ2	919 aa		11.41	□□□□□ -0.58
RNF4-218	ENST00000513284	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	11.41	□□□□□ -0.58
RNF4-218	ENST00000513284	TMX2-CTNND1	H3BSU7	103 aa		11.41	□□□□□ -0.58
RNF4-218	ENST00000513284	ACTN4	O43707	911 aa	Known RBP	11.41	□□□□□ -0.58
RNF4-218	ENST00000513284	LEFTY1	O75610	366 aa		11.41	□□□□□ -0.58
RNF4-218	ENST00000513284	FBXO21	O94952	628 aa		11.41	□□□□□ -0.58
RNF4-218	ENST00000513284	TRUB2	O95900	331 aa	Known RBP	11.41	□□□□□ -0.58
RNF4-218	ENST00000513284	ANXA6	P08133	673 aa		11.41	□□□□□ -0.58
RNF4-218	ENST00000513284	ADRB3	P13945	408 aa		11.41	□□□□□ -0.58
RNF4-218	ENST00000513284	CMA1	P23946	247 aa		11.41	□□□□□ -0.58
RNF4-218	ENST00000513284	SYK	P43405	635 aa		11.41	□□□□□ -0.58
RNF4-218	ENST00000513284	CD97	P48960	835 aa		11.41	□□□□□ -0.58
RNF4-218	ENST00000513284	CCDC15	Q0P6D6	951 aa		11.41	□□□□□ -0.58
RNF4-218	ENST00000513284	ADAM9	Q13443	819 aa		11.41	□□□□□ -0.58
RNF4-218	ENST00000513284	TAF5	Q15542	800 aa		11.41	□□□□□ -0.58
RNF4-218	ENST00000513284	ARTN	Q5T4W7	220 aa		11.41	□□□□□ -0.58
RNF4-218	ENST00000513284	KIAA1161	Q6NSJ0	714 aa		11.41	□□□□□ -0.58
RNF4-218	ENST00000513284	ESRP1	Q6NXG1	681 aa	Known RBP	11.41	□□□□□ -0.58
RNF4-218	ENST00000513284	DPY19L3	Q6ZPD9	716 aa		11.41	□□□□□ -0.58
RNF4-218	ENST00000513284	BEND5	Q7L4P6	421 aa		11.41	□□□□□ -0.58
RNF4-218	ENST00000513284	NKD1	Q969G9	470 aa		11.41	□□□□□ -0.58
RNF4-218	ENST00000513284	SPATA32	Q96LK8	384 aa		11.41	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 31 ms