RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 SEC22BO75396 215 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 PRLRP16471 622 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 ATP4AP20648 1035 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 NOS3P29474 1203 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 S100A3P33764 101 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 MATKP42679 507 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 DNAJC3Q13217 504 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 LAPTM5Q13571 262 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 ACAP2Q15057 778 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 LSM12Q3MHD2 195 aaKnown RBP4.3□□□□□ -1.72
VCAN-209ENST00000513016 NEPROQ6NW34 567 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 C12orf56Q8IXR9 622 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 AGGF1Q8N302 714 aaeCLIP4.3□□□□□ -1.72
VCAN-209ENST00000513016 ANKLE1Q8NAG6 615 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 ACTL9Q8TC94 416 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 POP5Q969H6 163 aaKnown RBP4.3□□□□□ -1.72
VCAN-209ENST00000513016 MYOCQ99972 504 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 SEMA3CQ99985 751 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 ROGDIQ9GZN7 287 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 RACGAP1Q9H0H5 632 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 DNAJC16Q9Y2G8 782 aa4.3□□□□□ -1.72
VCAN-209ENST00000513016 A0A1B0GVM2 712 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 TCAF2A6NFQ2 919 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 AIM2O14862 343 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 SNUPNO95149 360 aaKnown RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 TNFP01375 233 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 TACR2P21452 398 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 KCNJ1P48048 391 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 MAPKAPK2P49137 400 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 SMIM11AP58511 58 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 CDK18Q07002 472 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 HSPA14Q0VDF9 509 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 LRRC14Q15048 493 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 VARS2Q5ST30 1063 aaKnown RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 DEPDC1Q5TB30 811 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 GALNT18Q6P9A2 607 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 TXNDC11Q6PKC3 985 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 ADAMTSL2Q86TH1 951 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 C4orf33Q8N1A6 199 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 RIN3Q8TB24 985 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 PROX1Q92786 737 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 IRF2BPLQ9H1B7 796 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 MAGEH1Q9H213 219 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 ALG13Q9NP73 1137 aaKnown RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 UBP1Q9NZI7 540 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 NFKBIL1Q9UBC1 381 aaPredicted RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 CORO2BQ9UQ03 480 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 APOC4-APOC2K7ER74 178 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 IRAK2O43187 625 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 APOC2P02655 101 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 WASP42768 502 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 AVPR1BP47901 424 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 NCF4Q15080 339 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 C17orf64Q86WR6 236 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 COMMD2Q86X83 199 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 BPIFB1Q8TDL5 484 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 ACTRT2Q8TDY3 377 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 ASZ1Q8WWH4 475 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 KCTD13Q8WZ19 329 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 PRICKLE1Q96MT3 831 aaPredicted RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 NELL2Q99435 816 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 EBNA1BP2Q99848 306 aaKnown RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 GTPBP2Q9BX10 602 aaKnown RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 PCBD2Q9H0N5 130 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 NXF3Q9H4D5 531 aaKnown RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 RBPJLQ9UBG7 517 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 MORF4L1Q9UBU8 362 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 SQORQ9Y6N5 450 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 CAPN14A8MX76 684 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 A8MX80 341 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 VAPBO95292 243 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 KRT75O95678 551 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 ALBP02768 609 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 CHGBP05060 677 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 SYPP08247 313 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 FCGR1AP12314 374 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 CCNB1P14635 433 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 ABL2P42684 1182 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 MASP1P48740 699 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 PMS1P54277 932 aaKnown RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 ATP6V0D1P61421 351 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 SHROOM1Q2M3G4 852 aaPredicted RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 WDR59Q6PJI9 974 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 TMC5Q6UXY8 1006 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 ZNF296Q8WUU4 475 aaPredicted RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 ZHX1-C8orf76Q96EF9 292 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 SIPA1Q96FS4 1042 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 HGH1Q9BTY7 390 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 TRIM4Q9C037 500 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 ADNPQ9H2P0 1102 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 CYP4F12Q9HCS2 524 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 MLXIPLQ9NP71 852 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 A0A0A0MRY4 1105 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 A0A1W2PQH9 124 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 ESYT3A0FGR9 886 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 PSMA4P25789 261 aaKnown RBP4.29□□□□□ -1.72
VCAN-209ENST00000513016 CD86P42081 329 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 NUDT2P50583 147 aa4.29□□□□□ -1.72
VCAN-209ENST00000513016 MRPS25P82663 173 aaKnown RBP4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms