RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 EDF1O60869 148 aaKnown RBP11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 ETS2P15036 469 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 ITGB6P18564 788 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 NFKB1P19838 968 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 OXCT1P55809 520 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 MED22Q15528 200 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 SBK1Q52WX2 424 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 FOXR1Q6PIV2 292 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 SYT12Q8IV01 421 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 OR8H3Q8N146 312 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 FBXO30Q8TB52 745 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 ANKRA2Q9H9E1 313 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 TMEM260Q9NX78 707 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 SMPD3Q9NY59 655 aaPredicted RBP11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 GMIPQ9P107 970 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 USP18Q9UMW8 372 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 IGSF1Q8N6C5 1336 aa11.35□□□□□ -0.59
LIMCH1-217ENST00000512946 BTNL10A8MVZ5 291 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 FTH1P02794 183 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 ENO2P09104 434 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 CXCR2P25025 360 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 NTSP30990 170 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 CLCN2P51788 898 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 BMPR2Q13873 1038 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 NIPAL1Q6NVV3 410 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 TRIM40Q6P9F5 258 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 USP43Q70EL4 1123 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 LHFPL3Q86UP9 236 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 TMEM17Q86X19 198 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 TRIM48Q8IWZ4 208 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 YAF2Q8IY57 180 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 ZNF567Q8N184 647 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 UNKQ9C0B0 810 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 RC3H2Q9HBD1 1191 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 TOR4AQ9NXH8 423 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 CKLFQ9UBR5 152 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 ENTPD4Q9Y227 616 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 KANTRA0A1W2PQU2 76 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 CSH1P0DML2 217 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 CSH2P0DML3 217 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 ZNF37AP17032 561 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 GPD2P43304 727 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 MAPK12P53778 367 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 BCAT1P54687 386 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 OR2B6P58173 313 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 LSM3P62310 102 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 SLC25A3Q00325 362 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 ITGA7Q13683 1181 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 ZNF268Q14587 947 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 DOK7Q18PE1 504 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 LRRC38Q5VT99 294 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 SVOPLQ8N434 492 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 C9orf43Q8TAL5 461 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 BBS4Q96RK4 519 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 PFDN5Q99471 154 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 IRF2BPLQ9H1B7 796 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 TRPS1Q9UHF7 1281 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 KBTBD13C9JR72 458 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 GSC2O15499 205 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 TULP3O75386 442 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 GH2P01242 217 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 POLD2P49005 469 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 CYP2A13Q16696 494 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 VMACQ2NL98 169 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 ANXA8L1Q5VT79 327 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 RNF148Q8N7C7 305 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 SRFBP1Q8NEF9 429 aaKnown RBP11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 IPCEF1Q8WWN9 437 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 CD101Q93033 1021 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 FUCA2Q9BTY2 467 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 TLR10Q9BXR5 811 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 ZNF341Q9BYN7 854 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 OPTCQ9UBM4 332 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 FAM50BQ9Y247 325 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 HPSEQ9Y251 543 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 CFL2Q9Y281 166 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 KCNIP3Q9Y2W7 256 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 SH3BP1Q9Y3L3 701 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 PTPRKQ15262 1439 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 PRAMEF33A0A0G2JMD5 474 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 FAM25EA8MYX2 175 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 AP5Z1O43299 807 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 PRAMEF10O60809 474 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 TAF6P49848 677 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 PGDP52209 483 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 FAAP100Q0VG06 881 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 BNIP1Q12981 228 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 MAB21L1Q13394 359 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 SMU1Q2TAY7 513 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 CYP2U1Q7Z449 544 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 FAM13CQ8NE31 585 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 KAT5Q92993 513 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 S100PBPQ96BU1 408 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 TMEM121Q9BTD3 319 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 SAE1Q9UBE0 346 aaPredicted RBP11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 AP4E1Q9UPM8 1137 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 PCDHGC5Q9Y5F6 944 aa11.34□□□□□ -0.59
LIMCH1-217ENST00000512946 EIF4G3O43432 1585 aaKnown RBP11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 ANKARQ7Z5J8 1434 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 ISPDA4D126 451 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms